Analysis of interatomic Contacts of Structural Units in PDB entry:
5LFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LFD entry

There are 2 chains in PDB entry 5LFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 235
B
 MET 1GLY 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5LFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
46 64Right-handed alpha
Helix 3
AA3
A
80 88Right-handed alpha
Helix 4
AA4
A
95 105Right-handed alpha
Helix 5
AA5
A
116 118Right-handed 310
Helix 6
AA6
A
119 130Right-handed alpha
Helix 7
AA7
A
147 152Right-handed alpha
Helix 8
AA8
A
152 170Right-handed alpha
Helix 9
AA9
A
180 184Right-handed 310
Helix 10
AB1
A
186 195Right-handed alpha
Helix 11
AB2
A
200 215Right-handed alpha
Helix 12
AB3
B
11 26Right-handed alpha
Helix 13
AB4
B
46 64Right-handed alpha
Helix 14
AB5
B
80 88Right-handed alpha
Helix 15
AB6
B
95 105Right-handed alpha
Helix 16
AB7
B
116 118Right-handed 310
Helix 17
AB8
B
119 130Right-handed alpha
Helix 18
AB9
B
145 150Right-handed 310
Helix 19
AC1
B
152 171Right-handed alpha
Helix 20
AC2
B
180 184Right-handed 310
Helix 21
AC3
B
186 195Right-handed alpha
Helix 22
AC4
B
200 215Right-handed alpha
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There are 4 sheets in PDB entry 5LFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
2 7parallel
Strand 3
A
70 74parallel
Strand 4
A
92 94parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
110 114parallel
Strand 3
A
175 178parallel
Strand 4
A
198 199parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
2 7parallel
Strand 3
B
70 74parallel
Strand 4
B
92 94parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 141first strand
Strand 2
B
110 114parallel
Strand 3
B
175 178parallel
Strand 4
B
198 199parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il