Analysis of interatomic Contacts of Structural Units in PDB entry:
5LFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LFO entry

There is 1 chain in PDB entry 5LFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5GLN 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5LFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
70 80Right-handed alpha
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
88 94Right-handed alpha
Helix 5
AA5
A
115 134Right-handed alpha
Helix 6
AA6
A
146 160Right-handed alpha
Helix 7
AA7
A
166 189Right-handed alpha
Helix 8
AA8
A
192 196Right-handed 310
Helix 9
AA9
A
198 204Right-handed 310
Helix 10
AB1
A
218 229Right-handed alpha
Helix 11
AB2
A
281 292Right-handed alpha
Helix 12
AB3
A
298 308Right-handed alpha
Helix 13
AB4
A
352 357Right-handed 310
Helix 14
AB5
A
378 387Right-handed alpha
Helix 15
AB6
A
388 404Right-handed alpha
Helix 16
AB7
A
438 447Right-handed alpha
Helix 17
AB8
A
449 458Right-handed 310
Helix 18
AB9
A
464 468Right-handed 310
Helix 19
AC1
A
474 499Right-handed alpha
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There are 6 sheets in PDB entry 5LFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
32 36parallel
Strand 3
A
7 11parallel
Strand 4
A
275 278parallel
Strand 5
A
460 462parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
54 57anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
331 335parallel
Strand 3
A
359 362anti-parallel
Strand 4
A
371 377anti-parallel
Strand 5
A
313 319anti-parallel
Strand 6
A
414 417anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
261 265anti-parallel
Strand 3
A
240 244anti-parallel
Strand 4
A
293 294parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
258 259anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
430 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il