Analysis of interatomic Contacts of Structural Units in PDB entry:
5LFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LFR entry

There are 2 chains in PDB entry 5LFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19HIS 331
B
 GLY 20HIS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5LFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 86Right-handed 310
Helix 2
AA2
A
94 98Right-handed 310
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
177 181Right-handed 310
Helix 5
AA5
A
192 194Right-handed 310
Helix 6
AA6
A
207 211Right-handed 310
Helix 7
AA7
A
296 300Right-handed 310
Helix 8
AA8
B
65 69Right-handed 310
Helix 9
AA9
B
108 112Right-handed 310
Helix 10
AB1
B
207 211Right-handed 310
Helix 11
AB2
B
296 300Right-handed 310
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There are 16 sheets in PDB entry 5LFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
43 45anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
133 138parallel
Strand 3
A
113 120anti-parallel
Strand 4
A
56 62anti-parallel
Strand 5
A
72 75anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
133 138parallel
Strand 3
A
113 120anti-parallel
Strand 4
A
126 128anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
102 104anti-parallel
Strand 3
A
89 91anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
196 204anti-parallel
Strand 4
A
184 190anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
236 245parallel
Strand 3
A
257 266anti-parallel
Strand 4
A
287 292anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
214 220anti-parallel
Strand 3
A
227 233anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
312 324parallel
Strand 3
A
301 309anti-parallel
Strand 4
A
270 275anti-parallel
Strand 5
A
278 284anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
43 45anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
133 138parallel
Strand 3
B
114 120anti-parallel
Strand 4
B
56 61anti-parallel
Strand 5
B
72 75anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
133 138parallel
Strand 3
B
114 120anti-parallel
Strand 4
B
126 128anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
101 105anti-parallel
Strand 3
B
89 92anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
155 162anti-parallel
Strand 3
B
195 204anti-parallel
Strand 4
B
184 192anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
236 245parallel
Strand 3
B
257 266anti-parallel
Strand 4
B
287 292anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
214 220anti-parallel
Strand 3
B
227 233anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 252first strand
Strand 2
B
312 324parallel
Strand 3
B
301 309anti-parallel
Strand 4
B
270 275anti-parallel
Strand 5
B
278 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il