Analysis of interatomic Contacts of Structural Units in PDB entry:
5LFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LFZ entry

There is 1 chain in PDB entry 5LFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 42ARG 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5LFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 72Right-handed alpha
Helix 2
AA2
A
81 86Right-handed alpha
Helix 3
AA3
A
88 98Right-handed alpha
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
116 136Right-handed alpha
Helix 6
AA6
A
144 148Right-handed 310
Helix 7
AA7
A
150 155Right-handed alpha
Helix 8
AA8
A
169 174Right-handed alpha
Helix 9
AA9
A
175 187Right-handed alpha
Helix 10
AB1
A
199 216Right-handed alpha
Helix 11
AB2
A
222 227Right-handed alpha
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There are 3 sheets in PDB entry 5LFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
77 80parallel
Strand 3
A
49 55parallel
Strand 4
A
191 196parallel
Strand 5
A
166 167parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
77 80parallel
Strand 3
A
49 55parallel
Strand 4
A
219 220parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
237 238parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il