Analysis of interatomic Contacts of Structural Units in PDB entry:
5LG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LG5 entry

There are 6 chains in PDB entry 5LG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 236
B	MET 1	GLY 235
C	MET 1	TRP 236
D	MET 1	TRP 236
F	MET 1	PRO 237
G	MET 1	GLY 235

There are 66 helices in PDB entry 5LG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	26	Right-handed alpha
Helix 2	AA2	A	46	64	Right-handed alpha
Helix 3	AA3	A	80	88	Right-handed alpha
Helix 4	AA4	A	95	105	Right-handed alpha
Helix 5	AA5	A	116	118	Right-handed 310
Helix 6	AA6	A	119	130	Right-handed alpha
Helix 7	AA7	A	147	152	Right-handed alpha
Helix 8	AA8	A	152	170	Right-handed alpha
Helix 9	AA9	A	180	184	Right-handed 310
Helix 10	AB1	A	186	195	Right-handed alpha
Helix 11	AB2	A	200	215	Right-handed alpha
Helix 12	AB3	B	11	26	Right-handed alpha
Helix 13	AB4	B	46	64	Right-handed alpha
Helix 14	AB5	B	80	88	Right-handed alpha
Helix 15	AB6	B	95	105	Right-handed alpha
Helix 16	AB7	B	116	118	Right-handed 310
Helix 17	AB8	B	119	130	Right-handed alpha
Helix 18	AB9	B	147	152	Right-handed alpha
Helix 19	AC1	B	152	172	Right-handed alpha
Helix 20	AC2	B	180	184	Right-handed 310
Helix 21	AC3	B	186	195	Right-handed alpha
Helix 22	AC4	B	200	215	Right-handed alpha
Helix 23	AC5	C	11	26	Right-handed alpha
Helix 24	AC6	C	46	63	Right-handed alpha
Helix 25	AC7	C	80	88	Right-handed alpha
Helix 26	AC8	C	95	104	Right-handed alpha
Helix 27	AC9	C	116	118	Right-handed 310
Helix 28	AD1	C	119	130	Right-handed alpha
Helix 29	AD2	C	145	149	Right-handed 310
Helix 30	AD3	C	152	172	Right-handed alpha
Helix 31	AD4	C	180	184	Right-handed 310
Helix 32	AD5	C	186	195	Right-handed alpha
Helix 33	AD6	C	200	215	Right-handed alpha
Helix 34	AD7	D	11	26	Right-handed alpha
Helix 35	AD8	D	46	62	Right-handed alpha
Helix 36	AD9	D	80	88	Right-handed alpha
Helix 37	AE1	D	95	104	Right-handed alpha
Helix 38	AE2	D	116	118	Right-handed 310
Helix 39	AE3	D	119	130	Right-handed alpha
Helix 40	AE4	D	147	152	Right-handed alpha
Helix 41	AE5	D	152	170	Right-handed alpha
Helix 42	AE6	D	180	184	Right-handed 310
Helix 43	AE7	D	186	195	Right-handed alpha
Helix 44	AE8	D	200	215	Right-handed alpha
Helix 45	AE9	F	11	26	Right-handed alpha
Helix 46	AF1	F	46	64	Right-handed alpha
Helix 47	AF2	F	80	88	Right-handed alpha
Helix 48	AF3	F	95	104	Right-handed alpha
Helix 49	AF4	F	116	118	Right-handed 310
Helix 50	AF5	F	119	130	Right-handed alpha
Helix 51	AF6	F	147	152	Right-handed alpha
Helix 52	AF7	F	152	172	Right-handed alpha
Helix 53	AF8	F	180	184	Right-handed 310
Helix 54	AF9	F	186	195	Right-handed alpha
Helix 55	AG1	F	200	215	Right-handed alpha
Helix 56	AG2	G	11	26	Right-handed alpha
Helix 57	AG3	G	46	64	Right-handed alpha
Helix 58	AG4	G	80	88	Right-handed alpha
Helix 59	AG5	G	95	104	Right-handed alpha
Helix 60	AG6	G	116	118	Right-handed 310
Helix 61	AG7	G	119	130	Right-handed alpha
Helix 62	AG8	G	145	150	Right-handed alpha
Helix 63	AG9	G	152	170	Right-handed alpha
Helix 64	AH1	G	180	184	Right-handed 310
Helix 65	AH2	G	186	195	Right-handed alpha
Helix 66	AH3	G	200	215	Right-handed alpha

There are 18 sheets in PDB entry 5LG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	35	first strand
Strand 2	A	2	7	parallel
Strand 3	A	70	74	parallel
Strand 4	A	92	94	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	G	233	234	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	141	first strand
Strand 2	A	110	114	parallel
Strand 3	A	175	179	parallel
Strand 4	A	198	199	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	G	40	41	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	2	7	parallel
Strand 3	B	70	74	parallel
Strand 4	B	92	94	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	C	233	234	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	141	first strand
Strand 2	B	110	114	parallel
Strand 3	B	175	178	parallel
Strand 4	B	198	199	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	C	40	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	35	first strand
Strand 2	C	2	7	parallel
Strand 3	C	70	74	parallel
Strand 4	C	92	94	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	141	first strand
Strand 2	C	110	114	parallel
Strand 3	C	175	179	parallel
Strand 4	C	198	199	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	35	first strand
Strand 2	D	2	7	parallel
Strand 3	D	70	74	parallel
Strand 4	D	92	94	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	F	233	234	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	141	first strand
Strand 2	D	110	114	parallel
Strand 3	D	175	179	parallel
Strand 4	D	198	199	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	F	40	41	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	35	first strand
Strand 2	F	2	7	parallel
Strand 3	F	70	74	parallel
Strand 4	F	92	94	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	141	first strand
Strand 2	F	110	114	parallel
Strand 3	F	175	179	parallel
Strand 4	F	198	199	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	35	first strand
Strand 2	G	2	7	parallel
Strand 3	G	70	74	parallel
Strand 4	G	92	94	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	141	first strand
Strand 2	G	110	114	parallel
Strand 3	G	175	179	parallel
Strand 4	G	198	199	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LG5