Analysis of interatomic Contacts of Structural Units in PDB entry:
5LG6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LG6 entry

There are 2 chains in PDB entry 5LG6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 59	SER 963
B	LEU 61	SER 963

There are 81 helices in PDB entry 5LG6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	69	Right-handed 310
Helix 2	AA2	A	211	215	Right-handed 310
Helix 3	AA3	A	271	275	Right-handed 310
Helix 4	AA4	A	300	306	Right-handed alpha
Helix 5	AA5	A	309	327	Right-handed alpha
Helix 6	AA6	A	359	363	Right-handed alpha
Helix 7	AA7	A	370	390	Right-handed alpha
Helix 8	AA8	A	398	401	Right-handed 310
Helix 9	AA9	A	402	421	Right-handed alpha
Helix 10	AB1	A	425	428	Right-handed 310
Helix 11	AB2	A	429	434	Right-handed alpha
Helix 12	AB3	A	434	443	Right-handed alpha
Helix 13	AB4	A	453	457	Right-handed 310
Helix 14	AB5	A	459	466	Right-handed alpha
Helix 15	AB6	A	468	487	Right-handed alpha
Helix 16	AB7	A	487	503	Right-handed alpha
Helix 17	AB8	A	508	522	Right-handed alpha
Helix 18	AB9	A	531	542	Right-handed alpha
Helix 19	AC1	A	607	610	Right-handed 310
Helix 20	AC2	A	621	624	Right-handed 310
Helix 21	AC3	A	632	646	Right-handed alpha
Helix 22	AC4	A	647	650	Right-handed 310
Helix 23	AC5	A	651	668	Right-handed alpha
Helix 24	AC6	A	672	679	Right-handed alpha
Helix 25	AC7	A	680	686	Right-handed 310
Helix 26	AC8	A	688	707	Right-handed alpha
Helix 27	AC9	A	711	734	Right-handed alpha
Helix 28	AD1	A	743	760	Right-handed alpha
Helix 29	AD2	A	762	779	Right-handed alpha
Helix 30	AD3	A	786	801	Right-handed alpha
Helix 31	AD4	A	802	816	Right-handed alpha
Helix 32	AD5	A	818	829	Right-handed alpha
Helix 33	AD6	A	830	832	Right-handed 310
Helix 34	AD7	A	834	845	Right-handed alpha
Helix 35	AD8	A	852	866	Right-handed alpha
Helix 36	AD9	A	868	887	Right-handed alpha
Helix 37	AE1	A	893	904	Right-handed alpha
Helix 38	AE2	A	908	922	Right-handed alpha
Helix 39	AE3	A	927	929	Right-handed 310
Helix 40	AE4	A	930	963	Right-handed alpha
Helix 41	AE5	B	65	69	Right-handed 310
Helix 42	AE6	B	211	215	Right-handed 310
Helix 43	AE7	B	271	275	Right-handed 310
Helix 44	AE8	B	300	306	Right-handed alpha
Helix 45	AE9	B	309	327	Right-handed alpha
Helix 46	AF1	B	359	363	Right-handed alpha
Helix 47	AF2	B	370	390	Right-handed alpha
Helix 48	AF3	B	398	401	Right-handed 310
Helix 49	AF4	B	402	421	Right-handed alpha
Helix 50	AF5	B	425	428	Right-handed 310
Helix 51	AF6	B	429	434	Right-handed alpha
Helix 52	AF7	B	434	443	Right-handed alpha
Helix 53	AF8	B	453	457	Right-handed 310
Helix 54	AF9	B	459	466	Right-handed alpha
Helix 55	AG1	B	468	487	Right-handed alpha
Helix 56	AG2	B	487	503	Right-handed alpha
Helix 57	AG3	B	508	522	Right-handed alpha
Helix 58	AG4	B	531	542	Right-handed alpha
Helix 59	AG5	B	607	610	Right-handed 310
Helix 60	AG6	B	621	624	Right-handed 310
Helix 61	AG7	B	632	646	Right-handed alpha
Helix 62	AG8	B	647	650	Right-handed 310
Helix 63	AG9	B	651	668	Right-handed alpha
Helix 64	AH1	B	672	679	Right-handed alpha
Helix 65	AH2	B	680	686	Right-handed 310
Helix 66	AH3	B	688	707	Right-handed alpha
Helix 67	AH4	B	711	734	Right-handed alpha
Helix 68	AH5	B	743	760	Right-handed alpha
Helix 69	AH6	B	762	779	Right-handed alpha
Helix 70	AH7	B	786	801	Right-handed alpha
Helix 71	AH8	B	802	816	Right-handed alpha
Helix 72	AH9	B	818	829	Right-handed alpha
Helix 73	AI1	B	830	832	Right-handed 310
Helix 74	AI2	B	834	845	Right-handed alpha
Helix 75	AI3	B	852	866	Right-handed alpha
Helix 76	AI4	B	869	880	Right-handed alpha
Helix 77	AI5	B	880	887	Right-handed alpha
Helix 78	AI6	B	895	904	Right-handed alpha
Helix 79	AI7	B	908	922	Right-handed alpha
Helix 80	AI8	B	927	929	Right-handed 310
Helix 81	AI9	B	930	963	Right-handed alpha

There are 20 sheets in PDB entry 5LG6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	170	180	anti-parallel
Strand 3	A	133	136	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	170	180	anti-parallel
Strand 3	A	98	109	anti-parallel
Strand 4	A	76	87	anti-parallel
Strand 5	A	227	235	parallel
Strand 6	A	259	263	anti-parallel
Strand 7	A	251	252	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	119	first strand
Strand 2	A	156	165	anti-parallel
Strand 3	A	145	151	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	195	first strand
Strand 2	A	198	206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	277	280	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	288	first strand
Strand 2	A	294	299	anti-parallel
Strand 3	A	335	341	parallel
Strand 4	A	354	358	parallel
Strand 5	A	348	349	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	505	507	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	605	first strand
Strand 2	A	556	561	anti-parallel
Strand 3	A	546	551	anti-parallel
Strand 4	A	628	631	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	584	first strand
Strand 2	A	596	598	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	586	588	anti-parallel
Strand 3	A	617	619	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	170	180	anti-parallel
Strand 3	B	133	136	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	170	180	anti-parallel
Strand 3	B	98	109	anti-parallel
Strand 4	B	76	87	anti-parallel
Strand 5	B	227	235	parallel
Strand 6	B	259	263	anti-parallel
Strand 7	B	251	252	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	119	first strand
Strand 2	B	156	165	anti-parallel
Strand 3	B	145	151	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	195	first strand
Strand 2	B	198	206	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	277	280	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	294	299	anti-parallel
Strand 3	B	335	341	parallel
Strand 4	B	354	358	parallel
Strand 5	B	348	349	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	505	507	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	605	first strand
Strand 2	B	556	561	anti-parallel
Strand 3	B	546	551	anti-parallel
Strand 4	B	628	631	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	584	first strand
Strand 2	B	596	598	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	586	588	anti-parallel
Strand 3	B	617	619	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LG6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LG6