Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LGK entry

There are 5 chains in PDB entry 5LGK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 234	ALA 540
B	LYS 235	ALA 540
C	LYS 235	ALA 540
D	LYS 235	ALA 540
E	LYS 166	SER 215

There are 24 helices in PDB entry 5LGK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	276	278	Right-handed 310
Helix 2	AA2	A	301	305	Right-handed alpha
Helix 3	AA3	A	344	350	Right-handed alpha
Helix 4	AA4	A	406	413	Right-handed alpha
Helix 5	AA5	A	512	519	Right-handed alpha
Helix 6	AA6	B	276	278	Right-handed 310
Helix 7	AA7	B	301	305	Right-handed alpha
Helix 8	AA8	B	344	350	Right-handed alpha
Helix 9	AA9	B	406	413	Right-handed alpha
Helix 10	AB1	B	512	519	Right-handed alpha
Helix 11	AB2	C	276	278	Right-handed 310
Helix 12	AB3	C	301	305	Right-handed alpha
Helix 13	AB4	C	344	350	Right-handed alpha
Helix 14	AB5	C	406	413	Right-handed alpha
Helix 15	AB6	C	512	519	Right-handed alpha
Helix 16	AB7	D	276	278	Right-handed 310
Helix 17	AB8	D	301	305	Right-handed alpha
Helix 18	AB9	D	344	350	Right-handed alpha
Helix 19	AC1	D	406	413	Right-handed alpha
Helix 20	AC2	D	512	519	Right-handed alpha
Helix 21	AC3	E	183	194	Right-handed alpha
Helix 22	AC4	E	203	213	Right-handed alpha
Helix 23	AC5	F	183	194	Right-handed alpha
Helix 24	AC6	F	203	213	Right-handed alpha

There are 39 sheets in PDB entry 5LGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	B	237	239	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	252	first strand
Strand 2	A	290	300	anti-parallel
Strand 3	A	256	259	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	252	first strand
Strand 2	A	290	300	anti-parallel
Strand 3	A	280	287	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	310	315	anti-parallel
Strand 3	A	324	325	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	341	first strand
Strand 2	A	355	362	anti-parallel
Strand 3	A	397	404	anti-parallel
Strand 4	A	386	391	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	376	first strand
Strand 2	A	416	421	anti-parallel
Strand 3	A	429	430	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	449	first strand
Strand 2	A	460	467	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	491	492	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	449	first strand
Strand 2	A	460	467	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	496	497	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	523	527	anti-parallel
Strand 4	A	537	539	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	290	300	anti-parallel
Strand 3	B	256	259	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	290	300	anti-parallel
Strand 3	B	280	287	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	310	315	anti-parallel
Strand 3	B	324	325	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	355	361	anti-parallel
Strand 3	B	397	404	anti-parallel
Strand 4	B	386	391	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	376	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	429	430	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	460	467	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	491	492	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	460	467	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	496	497	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	475	480	anti-parallel
Strand 3	B	523	527	anti-parallel
Strand 4	B	537	539	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	D	237	239	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	290	300	anti-parallel
Strand 3	C	256	259	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	290	300	anti-parallel
Strand 3	C	280	287	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	310	316	anti-parallel
Strand 3	C	319	321	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	310	316	anti-parallel
Strand 3	C	324	325	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	341	first strand
Strand 2	C	355	362	anti-parallel
Strand 3	C	397	404	anti-parallel
Strand 4	C	386	391	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	416	420	anti-parallel
Strand 3	C	429	430	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	449	first strand
Strand 2	C	460	467	anti-parallel
Strand 3	C	503	511	anti-parallel
Strand 4	C	490	492	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	449	first strand
Strand 2	C	460	467	anti-parallel
Strand 3	C	503	511	anti-parallel
Strand 4	C	496	497	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	C	475	480	anti-parallel
Strand 3	C	523	527	anti-parallel
Strand 4	C	537	539	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	252	first strand
Strand 2	D	290	300	anti-parallel
Strand 3	D	256	259	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	252	first strand
Strand 2	D	290	300	anti-parallel
Strand 3	D	280	287	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	310	315	anti-parallel
Strand 3	D	324	325	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	341	first strand
Strand 2	D	355	362	anti-parallel
Strand 3	D	397	404	anti-parallel
Strand 4	D	386	391	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	376	first strand
Strand 2	D	416	421	anti-parallel
Strand 3	D	429	430	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	449	first strand
Strand 2	D	460	467	anti-parallel
Strand 3	D	503	511	anti-parallel
Strand 4	D	491	492	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	449	first strand
Strand 2	D	460	467	anti-parallel
Strand 3	D	503	511	anti-parallel
Strand 4	D	496	497	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	484	first strand
Strand 2	D	475	480	anti-parallel
Strand 3	D	523	527	anti-parallel
Strand 4	D	537	539	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	170	first strand
Strand 2	E	173	182	anti-parallel
Strand 3	E	277	283	anti-parallel
Strand 4	E	197	198	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	234	first strand
Strand 2	E	219	224	anti-parallel
Strand 3	E	259	262	anti-parallel
Strand 4	E	268	271	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	170	first strand
Strand 2	F	173	182	anti-parallel
Strand 3	F	277	283	anti-parallel
Strand 4	F	197	198	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	233	234	first strand
Strand 2	F	219	224	anti-parallel
Strand 3	F	259	262	anti-parallel
Strand 4	F	268	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LGK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGK