Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LGP entry

There are 2 chains in PDB entry 5LGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 136	THR 478
B	ARG 135	ARG 446

There are 58 helices in PDB entry 5LGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	136	142	Right-handed alpha
Helix 2	AA2	A	143	155	Right-handed alpha
Helix 3	AA3	A	156	165	Right-handed alpha
Helix 4	AA4	A	166	179	Right-handed alpha
Helix 5	AA5	A	180	184	Right-handed 310
Helix 6	AA6	A	197	206	Right-handed alpha
Helix 7	AA7	A	218	230	Right-handed alpha
Helix 8	AA8	A	268	276	Right-handed alpha
Helix 9	AA9	A	300	312	Right-handed alpha
Helix 10	AB1	A	313	315	Right-handed 310
Helix 11	AB2	A	324	326	Right-handed 310
Helix 12	AB3	A	327	337	Right-handed alpha
Helix 13	AB4	A	345	349	Right-handed 310
Helix 14	AB5	A	364	368	Right-handed 310
Helix 15	AB6	B	136	142	Right-handed alpha
Helix 16	AB7	B	143	155	Right-handed alpha
Helix 17	AB8	B	156	165	Right-handed alpha
Helix 18	AB9	B	166	179	Right-handed alpha
Helix 19	AC1	B	180	184	Right-handed 310
Helix 20	AC2	B	197	206	Right-handed alpha
Helix 21	AC3	B	218	230	Right-handed alpha
Helix 22	AC4	B	268	276	Right-handed alpha
Helix 23	AC5	B	300	312	Right-handed alpha
Helix 24	AC6	B	313	316	Right-handed 310
Helix 25	AC7	B	318	322	Right-handed 310
Helix 26	AC8	B	324	326	Right-handed 310
Helix 27	AC9	B	327	337	Right-handed alpha
Helix 28	AD1	B	345	349	Right-handed 310
Helix 29	AD2	B	364	368	Right-handed 310
Helix 30	AD3	C	137	142	Right-handed alpha
Helix 31	AD4	C	143	154	Right-handed alpha
Helix 32	AD5	C	156	165	Right-handed alpha
Helix 33	AD6	C	166	180	Right-handed alpha
Helix 34	AD7	C	181	184	Right-handed 310
Helix 35	AD8	C	197	206	Right-handed alpha
Helix 36	AD9	C	218	230	Right-handed alpha
Helix 37	AE1	C	268	276	Right-handed alpha
Helix 38	AE2	C	300	312	Right-handed alpha
Helix 39	AE3	C	313	315	Right-handed 310
Helix 40	AE4	C	324	326	Right-handed 310
Helix 41	AE5	C	327	337	Right-handed alpha
Helix 42	AE6	C	345	349	Right-handed 310
Helix 43	AE7	C	364	368	Right-handed 310
Helix 44	AE8	D	137	141	Right-handed alpha
Helix 45	AE9	D	143	155	Right-handed alpha
Helix 46	AF1	D	156	165	Right-handed alpha
Helix 47	AF2	D	166	180	Right-handed alpha
Helix 48	AF3	D	181	184	Right-handed 310
Helix 49	AF4	D	197	206	Right-handed alpha
Helix 50	AF5	D	218	230	Right-handed alpha
Helix 51	AF6	D	268	276	Right-handed alpha
Helix 52	AF7	D	300	313	Right-handed alpha
Helix 53	AF8	D	314	316	Right-handed 310
Helix 54	AF9	D	318	322	Right-handed 310
Helix 55	AG1	D	324	326	Right-handed 310
Helix 56	AG2	D	327	337	Right-handed alpha
Helix 57	AG3	D	345	349	Right-handed 310
Helix 58	AG4	D	364	368	Right-handed 310

There are 16 sheets in PDB entry 5LGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	240	first strand
Strand 2	A	210	215	parallel
Strand 3	A	188	192	parallel
Strand 4	A	252	257	parallel
Strand 5	A	280	287	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	290	298	anti-parallel
Strand 3	A	383	397	anti-parallel
Strand 4	A	402	406	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	290	298	anti-parallel
Strand 3	A	383	397	anti-parallel
Strand 4	A	418	429	anti-parallel
Strand 5	A	340	342	anti-parallel
Strand 6	A	474	475	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	378	first strand
Strand 2	A	434	444	anti-parallel
Strand 3	A	448	457	anti-parallel
Strand 4	A	463	469	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	210	215	parallel
Strand 3	B	188	192	parallel
Strand 4	B	252	257	parallel
Strand 5	B	280	287	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	359	first strand
Strand 2	B	290	298	anti-parallel
Strand 3	B	383	397	anti-parallel
Strand 4	B	402	406	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	359	first strand
Strand 2	B	290	298	anti-parallel
Strand 3	B	383	397	anti-parallel
Strand 4	B	418	429	anti-parallel
Strand 5	B	340	342	anti-parallel
Strand 6	B	474	475	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	378	first strand
Strand 2	B	434	444	anti-parallel
Strand 3	B	448	457	anti-parallel
Strand 4	B	463	469	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	240	first strand
Strand 2	C	210	215	parallel
Strand 3	C	188	192	parallel
Strand 4	C	252	257	parallel
Strand 5	C	280	287	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	383	397	anti-parallel
Strand 4	C	402	406	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	383	397	anti-parallel
Strand 4	C	418	429	anti-parallel
Strand 5	C	340	342	anti-parallel
Strand 6	C	474	475	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	378	first strand
Strand 2	C	434	444	anti-parallel
Strand 3	C	448	457	anti-parallel
Strand 4	C	463	469	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	240	first strand
Strand 2	D	210	215	parallel
Strand 3	D	188	192	parallel
Strand 4	D	252	257	parallel
Strand 5	D	280	287	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	290	298	anti-parallel
Strand 3	D	383	397	anti-parallel
Strand 4	D	402	406	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	290	298	anti-parallel
Strand 3	D	383	397	anti-parallel
Strand 4	D	418	429	anti-parallel
Strand 5	D	340	342	anti-parallel
Strand 6	D	474	475	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	378	first strand
Strand 2	D	434	444	anti-parallel
Strand 3	D	448	457	anti-parallel
Strand 4	D	463	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGP