Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LGV entry

There are 2 chains in PDB entry 5LGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	ARG 663
B	PRO 15	GLY 636

There are 53 helices in PDB entry 5LGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	109	125	Right-handed alpha
Helix 3	AA3	A	127	146	Right-handed alpha
Helix 4	AA4	A	148	164	Right-handed alpha
Helix 5	AA5	A	168	175	Right-handed alpha
Helix 6	AA6	A	178	188	Right-handed alpha
Helix 7	AA7	A	206	210	Right-handed 310
Helix 8	AA8	A	218	222	Right-handed 310
Helix 9	AA9	A	231	236	Right-handed alpha
Helix 10	AB1	A	238	245	Right-handed alpha
Helix 11	AB2	A	265	269	Right-handed 310
Helix 12	AB3	A	294	298	Right-handed 310
Helix 13	AB4	A	299	313	Right-handed alpha
Helix 14	AB5	A	330	335	Right-handed alpha
Helix 15	AB6	A	336	339	Right-handed 310
Helix 16	AB7	A	368	386	Right-handed alpha
Helix 17	AB8	A	396	399	Right-handed 310
Helix 18	AB9	A	400	415	Right-handed alpha
Helix 19	AC1	A	427	437	Right-handed alpha
Helix 20	AC2	A	445	449	Right-handed 310
Helix 21	AC3	A	451	463	Right-handed alpha
Helix 22	AC4	A	464	469	Right-handed 310
Helix 23	AC5	A	483	505	Right-handed alpha
Helix 24	AC6	A	513	517	Right-handed 310
Helix 25	AC7	A	541	549	Right-handed alpha
Helix 26	AC8	A	552	566	Right-handed alpha
Helix 27	AC9	A	567	571	Right-handed 310
Helix 28	AD1	A	616	621	Right-handed 310
Helix 29	AD2	B	30	34	Right-handed 310
Helix 30	AD3	B	109	125	Right-handed alpha
Helix 31	AD4	B	127	146	Right-handed alpha
Helix 32	AD5	B	148	164	Right-handed alpha
Helix 33	AD6	B	168	175	Right-handed alpha
Helix 34	AD7	B	178	188	Right-handed alpha
Helix 35	AD8	B	206	210	Right-handed 310
Helix 36	AD9	B	218	222	Right-handed 310
Helix 37	AE1	B	231	236	Right-handed alpha
Helix 38	AE2	B	238	245	Right-handed alpha
Helix 39	AE3	B	299	313	Right-handed alpha
Helix 40	AE4	B	330	335	Right-handed alpha
Helix 41	AE5	B	336	339	Right-handed 310
Helix 42	AE6	B	368	386	Right-handed alpha
Helix 43	AE7	B	396	399	Right-handed 310
Helix 44	AE8	B	400	415	Right-handed alpha
Helix 45	AE9	B	427	437	Right-handed alpha
Helix 46	AF1	B	445	449	Right-handed 310
Helix 47	AF2	B	451	464	Right-handed alpha
Helix 48	AF3	B	465	469	Right-handed 310
Helix 49	AF4	B	483	505	Right-handed alpha
Helix 50	AF5	B	541	549	Right-handed alpha
Helix 51	AF6	B	552	566	Right-handed alpha
Helix 52	AF7	B	567	571	Right-handed 310
Helix 53	AF8	B	617	621	Right-handed 310

There are 16 sheets in PDB entry 5LGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	44	51	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	79	80	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	200	205	parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	59	66	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	200	205	parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	192	196	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	419	423	parallel
Strand 3	A	390	394	parallel
Strand 4	A	316	321	parallel
Strand 5	A	249	252	parallel
Strand 6	A	212	216	parallel
Strand 7	A	507	511	parallel
Strand 8	A	474	475	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	361	362	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	355	357	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	577	first strand
Strand 2	A	585	592	anti-parallel
Strand 3	A	595	602	anti-parallel
Strand 4	A	656	661	anti-parallel
Strand 5	A	627	632	anti-parallel
Strand 6	A	638	642	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	614	first strand
Strand 2	A	644	649	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	44	51	anti-parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	79	80	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	200	205	parallel
Strand 3	B	98	108	anti-parallel
Strand 4	B	59	66	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	200	205	parallel
Strand 3	B	98	108	anti-parallel
Strand 4	B	192	196	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	419	423	parallel
Strand 3	B	390	394	parallel
Strand 4	B	316	321	parallel
Strand 5	B	249	252	parallel
Strand 6	B	212	216	parallel
Strand 7	B	507	511	parallel
Strand 8	B	474	475	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	361	362	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	355	357	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	578	first strand
Strand 2	B	585	592	anti-parallel
Strand 3	B	595	602	anti-parallel
Strand 4	B	656	661	anti-parallel
Strand 5	B	627	632	anti-parallel
Strand 6	B	638	642	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	614	first strand
Strand 2	B	644	649	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGV