Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LHA entry

There are 3 chains in PDB entry 5LHA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	GLY 449
B	LYS 4	GLY 449
C	GLU 3	SER 424

There are 77 helices in PDB entry 5LHA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	50	55	Right-handed alpha
Helix 3	AA3	A	62	77	Right-handed alpha
Helix 4	AA4	A	87	101	Right-handed alpha
Helix 5	AA5	A	102	104	Right-handed 310
Helix 6	AA6	A	114	133	Right-handed alpha
Helix 7	AA7	A	152	158	Right-handed alpha
Helix 8	AA8	A	161	169	Right-handed 310
Helix 9	AA9	A	192	212	Right-handed alpha
Helix 10	AB1	A	236	248	Right-handed alpha
Helix 11	AB2	A	268	273	Right-handed alpha
Helix 12	AB3	A	283	287	Right-handed 310
Helix 13	AB4	A	300	308	Right-handed alpha
Helix 14	AB5	A	310	313	Right-handed 310
Helix 15	AB6	A	325	342	Right-handed alpha
Helix 16	AB7	A	343	360	Right-handed alpha
Helix 17	AB8	A	360	366	Right-handed alpha
Helix 18	AB9	A	394	397	Right-handed 310
Helix 19	AC1	A	398	410	Right-handed alpha
Helix 20	AC2	A	430	449	Right-handed alpha
Helix 21	AC3	B	22	26	Right-handed 310
Helix 22	AC4	B	50	55	Right-handed alpha
Helix 23	AC5	B	62	77	Right-handed alpha
Helix 24	AC6	B	87	101	Right-handed alpha
Helix 25	AC7	B	114	133	Right-handed alpha
Helix 26	AC8	B	152	158	Right-handed alpha
Helix 27	AC9	B	161	165	Right-handed 310
Helix 28	AD1	B	192	212	Right-handed alpha
Helix 29	AD2	B	236	248	Right-handed alpha
Helix 30	AD3	B	268	273	Right-handed alpha
Helix 31	AD4	B	283	287	Right-handed 310
Helix 32	AD5	B	300	308	Right-handed alpha
Helix 33	AD6	B	310	313	Right-handed 310
Helix 34	AD7	B	325	342	Right-handed alpha
Helix 35	AD8	B	343	366	Right-handed alpha
Helix 36	AD9	B	394	397	Right-handed 310
Helix 37	AE1	B	398	410	Right-handed alpha
Helix 38	AE2	B	430	449	Right-handed alpha
Helix 39	AE3	C	22	26	Right-handed 310
Helix 40	AE4	C	50	55	Right-handed alpha
Helix 41	AE5	C	62	77	Right-handed alpha
Helix 42	AE6	C	87	101	Right-handed alpha
Helix 43	AE7	C	102	104	Right-handed 310
Helix 44	AE8	C	114	133	Right-handed alpha
Helix 45	AE9	C	152	158	Right-handed alpha
Helix 46	AF1	C	161	165	Right-handed 310
Helix 47	AF2	C	192	212	Right-handed alpha
Helix 48	AF3	C	236	248	Right-handed alpha
Helix 49	AF4	C	268	273	Right-handed alpha
Helix 50	AF5	C	283	287	Right-handed 310
Helix 51	AF6	C	300	308	Right-handed alpha
Helix 52	AF7	C	310	313	Right-handed 310
Helix 53	AF8	C	325	342	Right-handed alpha
Helix 54	AF9	C	343	360	Right-handed alpha
Helix 55	AG1	C	360	366	Right-handed alpha
Helix 56	AG2	C	394	397	Right-handed 310
Helix 57	AG3	C	398	410	Right-handed alpha
Helix 58	AG4	C	430	449	Right-handed alpha
Helix 59	AG5	D	22	26	Right-handed 310
Helix 60	AG6	D	50	55	Right-handed alpha
Helix 61	AG7	D	62	76	Right-handed alpha
Helix 62	AG8	D	87	101	Right-handed alpha
Helix 63	AG9	D	102	104	Right-handed 310
Helix 64	AH1	D	114	133	Right-handed alpha
Helix 65	AH2	D	152	158	Right-handed alpha
Helix 66	AH3	D	161	165	Right-handed 310
Helix 67	AH4	D	192	212	Right-handed alpha
Helix 68	AH5	D	236	249	Right-handed alpha
Helix 69	AH6	D	268	273	Right-handed alpha
Helix 70	AH7	D	283	287	Right-handed 310
Helix 71	AH8	D	300	308	Right-handed alpha
Helix 72	AH9	D	310	313	Right-handed 310
Helix 73	AI1	D	325	342	Right-handed alpha
Helix 74	AI2	D	343	366	Right-handed alpha
Helix 75	AI3	D	394	397	Right-handed 310
Helix 76	AI4	D	398	410	Right-handed alpha
Helix 77	AI5	D	430	449	Right-handed alpha

There are 19 sheets in PDB entry 5LHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	C	315	316	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	413	first strand
Strand 2	A	45	48	parallel
Strand 3	A	37	40	anti-parallel
Strand 4	A	28	34	anti-parallel
Strand 5	C	85	86	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	C	28	34	parallel
Strand 3	C	37	40	anti-parallel
Strand 4	C	45	47	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	112	first strand
Strand 2	A	294	299	anti-parallel
Strand 3	A	279	282	anti-parallel
Strand 4	A	251	255	parallel
Strand 5	A	216	221	parallel
Strand 6	A	140	144	parallel
Strand 7	A	175	178	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	316	first strand
Strand 2	C	17	18	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	375	first strand
Strand 2	A	378	386	anti-parallel
Strand 3	A	391	392	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	375	first strand
Strand 2	A	378	386	anti-parallel
Strand 3	A	420	423	anti-parallel
Strand 4	A	415	417	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	D	315	316	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	413	first strand
Strand 2	B	45	48	parallel
Strand 3	B	37	40	anti-parallel
Strand 4	B	28	34	anti-parallel
Strand 5	D	85	86	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	D	28	34	parallel
Strand 3	D	37	40	anti-parallel
Strand 4	D	45	47	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	112	first strand
Strand 2	B	294	299	anti-parallel
Strand 3	B	279	282	anti-parallel
Strand 4	B	251	255	parallel
Strand 5	B	216	221	parallel
Strand 6	B	140	144	parallel
Strand 7	B	175	178	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	316	first strand
Strand 2	D	17	18	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	375	first strand
Strand 2	B	378	386	anti-parallel
Strand 3	B	391	392	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	375	first strand
Strand 2	B	378	386	anti-parallel
Strand 3	B	420	423	anti-parallel
Strand 4	B	415	417	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	112	first strand
Strand 2	C	294	299	anti-parallel
Strand 3	C	279	282	anti-parallel
Strand 4	C	251	255	parallel
Strand 5	C	216	221	parallel
Strand 6	C	140	144	parallel
Strand 7	C	175	178	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	375	first strand
Strand 2	C	378	383	anti-parallel
Strand 3	C	420	423	anti-parallel
Strand 4	C	415	417	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	112	first strand
Strand 2	D	294	299	anti-parallel
Strand 3	D	279	282	anti-parallel
Strand 4	D	251	255	parallel
Strand 5	D	216	221	parallel
Strand 6	D	140	144	parallel
Strand 7	D	175	178	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	375	first strand
Strand 2	D	378	386	anti-parallel
Strand 3	D	391	392	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	375	first strand
Strand 2	D	378	386	anti-parallel
Strand 3	D	420	423	anti-parallel
Strand 4	D	415	417	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LHA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHA