Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LHD entry

There are 2 chains in PDB entry 5LHD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 63	LYS 967
B	THR 64	TRP 404

There are168 helices in PDB entry 5LHD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	216	220	Right-handed 310
Helix 3	AA3	A	276	280	Right-handed 310
Helix 4	AA4	A	305	311	Right-handed alpha
Helix 5	AA5	A	314	333	Right-handed alpha
Helix 6	AA6	A	364	368	Right-handed alpha
Helix 7	AA7	A	375	393	Right-handed alpha
Helix 8	AA8	A	403	405	Right-handed 310
Helix 9	AA9	A	406	426	Right-handed alpha
Helix 10	AB1	A	430	433	Right-handed 310
Helix 11	AB2	A	434	439	Right-handed alpha
Helix 12	AB3	A	439	448	Right-handed alpha
Helix 13	AB4	A	458	462	Right-handed 310
Helix 14	AB5	A	464	470	Right-handed alpha
Helix 15	AB6	A	473	491	Right-handed alpha
Helix 16	AB7	A	492	507	Right-handed alpha
Helix 17	AB8	A	513	529	Right-handed alpha
Helix 18	AB9	A	535	545	Right-handed alpha
Helix 19	AC1	A	610	613	Right-handed 310
Helix 20	AC2	A	624	627	Right-handed 310
Helix 21	AC3	A	635	650	Right-handed alpha
Helix 22	AC4	A	651	653	Right-handed 310
Helix 23	AC5	A	654	671	Right-handed alpha
Helix 24	AC6	A	675	682	Right-handed alpha
Helix 25	AC7	A	683	689	Right-handed 310
Helix 26	AC8	A	691	710	Right-handed alpha
Helix 27	AC9	A	714	737	Right-handed alpha
Helix 28	AD1	A	746	763	Right-handed alpha
Helix 29	AD2	A	765	782	Right-handed alpha
Helix 30	AD3	A	789	804	Right-handed alpha
Helix 31	AD4	A	805	818	Right-handed alpha
Helix 32	AD5	A	821	832	Right-handed alpha
Helix 33	AD6	A	833	835	Right-handed 310
Helix 34	AD7	A	837	848	Right-handed alpha
Helix 35	AD8	A	855	857	Right-handed 310
Helix 36	AD9	A	858	869	Right-handed alpha
Helix 37	AE1	A	869	883	Right-handed alpha
Helix 38	AE2	A	883	888	Right-handed alpha
Helix 39	AE3	A	897	907	Right-handed alpha
Helix 40	AE4	A	911	925	Right-handed alpha
Helix 41	AE5	A	930	932	Right-handed 310
Helix 42	AE6	A	933	965	Right-handed alpha
Helix 43	AE7	B	69	73	Right-handed 310
Helix 44	AE8	B	216	220	Right-handed 310
Helix 45	AE9	B	276	280	Right-handed 310
Helix 46	AF1	B	305	311	Right-handed alpha
Helix 47	AF2	B	314	333	Right-handed alpha
Helix 48	AF3	B	364	368	Right-handed alpha
Helix 49	AF4	B	375	393	Right-handed alpha
Helix 50	AF5	B	403	405	Right-handed 310
Helix 51	AF6	B	406	426	Right-handed alpha
Helix 52	AF7	B	430	433	Right-handed 310
Helix 53	AF8	B	434	439	Right-handed alpha
Helix 54	AF9	B	439	448	Right-handed alpha
Helix 55	AG1	B	458	462	Right-handed 310
Helix 56	AG2	B	464	470	Right-handed alpha
Helix 57	AG3	B	473	491	Right-handed alpha
Helix 58	AG4	B	492	508	Right-handed alpha
Helix 59	AG5	B	513	528	Right-handed alpha
Helix 60	AG6	B	535	545	Right-handed alpha
Helix 61	AG7	B	610	613	Right-handed 310
Helix 62	AG8	B	624	627	Right-handed 310
Helix 63	AG9	B	635	650	Right-handed alpha
Helix 64	AH1	B	651	653	Right-handed 310
Helix 65	AH2	B	654	671	Right-handed alpha
Helix 66	AH3	B	675	682	Right-handed alpha
Helix 67	AH4	B	683	689	Right-handed 310
Helix 68	AH5	B	691	710	Right-handed alpha
Helix 69	AH6	B	714	737	Right-handed alpha
Helix 70	AH7	B	746	763	Right-handed alpha
Helix 71	AH8	B	765	782	Right-handed alpha
Helix 72	AH9	B	789	804	Right-handed alpha
Helix 73	AI1	B	805	819	Right-handed alpha
Helix 74	AI2	B	821	832	Right-handed alpha
Helix 75	AI3	B	833	835	Right-handed 310
Helix 76	AI4	B	837	848	Right-handed alpha
Helix 77	AI5	B	855	857	Right-handed 310
Helix 78	AI6	B	858	868	Right-handed alpha
Helix 79	AI7	B	869	883	Right-handed alpha
Helix 80	AI8	B	883	890	Right-handed alpha
Helix 81	AI9	B	897	906	Right-handed alpha
Helix 82	AJ1	B	911	925	Right-handed alpha
Helix 83	AJ2	B	930	932	Right-handed 310
Helix 84	AJ3	B	933	965	Right-handed alpha
Helix 85	AJ4	C	69	73	Right-handed 310
Helix 86	AJ5	C	216	220	Right-handed 310
Helix 87	AJ6	C	276	280	Right-handed 310
Helix 88	AJ7	C	305	311	Right-handed alpha
Helix 89	AJ8	C	314	332	Right-handed alpha
Helix 90	AJ9	C	364	368	Right-handed alpha
Helix 91	AK1	C	375	392	Right-handed alpha
Helix 92	AK2	C	403	405	Right-handed 310
Helix 93	AK3	C	406	426	Right-handed alpha
Helix 94	AK4	C	430	433	Right-handed 310
Helix 95	AK5	C	434	439	Right-handed alpha
Helix 96	AK6	C	439	448	Right-handed alpha
Helix 97	AK7	C	458	462	Right-handed 310
Helix 98	AK8	C	464	470	Right-handed alpha
Helix 99	AK9	C	473	491	Right-handed alpha
Helix 100	AL1	C	492	508	Right-handed alpha
Helix 101	AL2	C	513	528	Right-handed alpha
Helix 102	AL3	C	535	545	Right-handed alpha
Helix 103	AL4	C	610	613	Right-handed 310
Helix 104	AL5	C	624	627	Right-handed 310
Helix 105	AL6	C	635	650	Right-handed alpha
Helix 106	AL7	C	651	653	Right-handed 310
Helix 107	AL8	C	654	671	Right-handed alpha
Helix 108	AL9	C	675	682	Right-handed alpha
Helix 109	AM1	C	683	689	Right-handed 310
Helix 110	AM2	C	691	710	Right-handed alpha
Helix 111	AM3	C	714	737	Right-handed alpha
Helix 112	AM4	C	746	763	Right-handed alpha
Helix 113	AM5	C	765	782	Right-handed alpha
Helix 114	AM6	C	789	804	Right-handed alpha
Helix 115	AM7	C	805	818	Right-handed alpha
Helix 116	AM8	C	821	832	Right-handed alpha
Helix 117	AM9	C	833	835	Right-handed 310
Helix 118	AN1	C	837	849	Right-handed alpha
Helix 119	AN2	C	855	857	Right-handed 310
Helix 120	AN3	C	858	869	Right-handed alpha
Helix 121	AN4	C	869	883	Right-handed alpha
Helix 122	AN5	C	883	891	Right-handed alpha
Helix 123	AN6	C	897	907	Right-handed alpha
Helix 124	AN7	C	911	925	Right-handed alpha
Helix 125	AN8	C	930	932	Right-handed 310
Helix 126	AN9	C	933	965	Right-handed alpha
Helix 127	AO1	D	69	73	Right-handed 310
Helix 128	AO2	D	216	220	Right-handed 310
Helix 129	AO3	D	276	280	Right-handed 310
Helix 130	AO4	D	305	311	Right-handed alpha
Helix 131	AO5	D	314	332	Right-handed alpha
Helix 132	AO6	D	365	367	Right-handed 310
Helix 133	AO7	D	375	393	Right-handed alpha
Helix 134	AO8	D	403	405	Right-handed 310
Helix 135	AO9	D	406	426	Right-handed alpha
Helix 136	AP1	D	430	433	Right-handed 310
Helix 137	AP2	D	434	439	Right-handed alpha
Helix 138	AP3	D	439	448	Right-handed alpha
Helix 139	AP4	D	458	462	Right-handed 310
Helix 140	AP5	D	464	470	Right-handed alpha
Helix 141	AP6	D	473	491	Right-handed alpha
Helix 142	AP7	D	492	507	Right-handed alpha
Helix 143	AP8	D	513	529	Right-handed alpha
Helix 144	AP9	D	535	545	Right-handed alpha
Helix 145	AQ1	D	610	613	Right-handed 310
Helix 146	AQ2	D	624	627	Right-handed 310
Helix 147	AQ3	D	635	650	Right-handed alpha
Helix 148	AQ4	D	651	653	Right-handed 310
Helix 149	AQ5	D	654	671	Right-handed alpha
Helix 150	AQ6	D	675	682	Right-handed alpha
Helix 151	AQ7	D	683	689	Right-handed 310
Helix 152	AQ8	D	691	710	Right-handed alpha
Helix 153	AQ9	D	714	737	Right-handed alpha
Helix 154	AR1	D	746	763	Right-handed alpha
Helix 155	AR2	D	765	782	Right-handed alpha
Helix 156	AR3	D	789	804	Right-handed alpha
Helix 157	AR4	D	805	818	Right-handed alpha
Helix 158	AR5	D	821	832	Right-handed alpha
Helix 159	AR6	D	833	835	Right-handed 310
Helix 160	AR7	D	837	848	Right-handed alpha
Helix 161	AR8	D	855	857	Right-handed 310
Helix 162	AR9	D	858	868	Right-handed alpha
Helix 163	AS1	D	869	883	Right-handed alpha
Helix 164	AS2	D	883	891	Right-handed alpha
Helix 165	AS3	D	897	906	Right-handed alpha
Helix 166	AS4	D	911	925	Right-handed alpha
Helix 167	AS5	D	930	932	Right-handed 310
Helix 168	AS6	D	933	965	Right-handed alpha

There are 40 sheets in PDB entry 5LHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	137	141	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	102	113	anti-parallel
Strand 4	A	80	91	anti-parallel
Strand 5	A	232	240	parallel
Strand 6	A	261	268	anti-parallel
Strand 7	A	256	258	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	123	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	150	156	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	200	first strand
Strand 2	A	203	211	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	282	285	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	293	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	340	346	parallel
Strand 4	A	359	363	parallel
Strand 5	A	353	354	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	511	512	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	608	first strand
Strand 2	A	560	565	anti-parallel
Strand 3	A	550	555	anti-parallel
Strand 4	A	631	634	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	A	600	602	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	596	first strand
Strand 2	A	590	592	anti-parallel
Strand 3	A	620	622	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	175	185	anti-parallel
Strand 3	B	138	141	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	175	185	anti-parallel
Strand 3	B	102	113	anti-parallel
Strand 4	B	80	91	anti-parallel
Strand 5	B	232	240	parallel
Strand 6	B	264	268	anti-parallel
Strand 7	B	256	257	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	150	156	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	200	first strand
Strand 2	B	203	211	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	282	285	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	293	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	340	346	parallel
Strand 4	B	359	363	parallel
Strand 5	B	353	354	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	510	512	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	608	first strand
Strand 2	B	560	565	anti-parallel
Strand 3	B	550	555	anti-parallel
Strand 4	B	631	634	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	B	600	602	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	596	first strand
Strand 2	B	590	592	anti-parallel
Strand 3	B	620	622	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	175	185	anti-parallel
Strand 3	C	138	142	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	175	185	anti-parallel
Strand 3	C	102	113	anti-parallel
Strand 4	C	80	92	anti-parallel
Strand 5	C	232	240	parallel
Strand 6	C	261	268	anti-parallel
Strand 7	C	256	258	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	150	156	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	200	first strand
Strand 2	C	203	211	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	282	285	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	293	first strand
Strand 2	C	299	304	anti-parallel
Strand 3	C	340	346	parallel
Strand 4	C	359	363	parallel
Strand 5	C	353	354	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	511	512	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	606	608	first strand
Strand 2	C	560	565	anti-parallel
Strand 3	C	550	555	anti-parallel
Strand 4	C	631	634	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	588	first strand
Strand 2	C	600	602	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	596	first strand
Strand 2	C	590	592	anti-parallel
Strand 3	C	620	622	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	175	185	anti-parallel
Strand 3	D	138	141	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	175	185	anti-parallel
Strand 3	D	102	113	anti-parallel
Strand 4	D	80	91	anti-parallel
Strand 5	D	232	240	parallel
Strand 6	D	261	268	anti-parallel
Strand 7	D	256	258	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	150	156	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	200	first strand
Strand 2	D	203	211	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	282	285	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	293	first strand
Strand 2	D	299	304	anti-parallel
Strand 3	D	340	346	parallel
Strand 4	D	359	363	parallel
Strand 5	D	353	354	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	401	first strand
Strand 2	D	510	512	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	606	608	first strand
Strand 2	D	560	565	anti-parallel
Strand 3	D	550	555	anti-parallel
Strand 4	D	631	634	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	588	first strand
Strand 2	D	600	602	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	595	596	first strand
Strand 2	D	590	592	anti-parallel
Strand 3	D	620	622	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LHD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHD