Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LHE entry

There is 1 chain in PDB entry 5LHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLY 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 5LHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
39 50Right-handed alpha
Helix 3
AA3
A
62 74Right-handed alpha
Helix 4
AA4
A
85 97Right-handed alpha
Helix 5
AA5
A
112 125Right-handed alpha
Helix 6
AA6
A
140 153Right-handed alpha
Helix 7
AA7
A
168 177Right-handed alpha
Helix 8
AA8
A
184 186Right-handed 310
Helix 9
AA9
A
194 206Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5LHE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
25 29parallel
Strand 3
A
54 58parallel
Strand 4
A
77 80parallel
Strand 5
A
99 105parallel
Strand 6
A
131 135parallel
Strand 7
A
159 161parallel
Strand 8
A
180 183parallel
Strand 9
A
4 8parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
192 193anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il