Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LHJ entry

There is 1 chain in PDB entry 5LHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 35GLY 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5LHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 56Right-handed alpha
Helix 2
AA2
A
84 88Right-handed 310
Helix 3
AA3
A
89 103Right-handed alpha
Helix 4
AA4
A
114 117Right-handed 310
Helix 5
AA5
A
123 140Right-handed alpha
Helix 6
AA6
A
163 186Right-handed alpha
Helix 7
AA7
A
192 208Right-handed alpha
Helix 8
AA8
A
215 221Right-handed alpha
Helix 9
AA9
A
224 232Right-handed alpha
Helix 10
AB1
A
268 272Right-handed 310
Helix 11
AB2
A
285 302Right-handed alpha
Helix 12
AB3
A
344 359Right-handed alpha
Helix 13
AB4
A
376 383Right-handed alpha
Helix 14
AB5
A
393 408Right-handed alpha
Helix 15
AB6
A
417 425Right-handed 310
Helix 16
AB7
A
439 450Right-handed alpha
Helix 17
AB8
A
485 499Right-handed alpha
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There are 5 sheets in PDB entry 5LHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
38 43parallel
Strand 4
A
109 112parallel
Strand 5
A
156 159parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
239 245anti-parallel
Strand 3
A
306 316anti-parallel
Strand 4
A
262 266parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
239 245anti-parallel
Strand 3
A
306 316anti-parallel
Strand 4
A
255 260parallel
Strand 5
A
367 372parallel
Strand 6
A
458 462parallel
Strand 7
A
386 390anti-parallel
Strand 8
A
410 413parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
336 338anti-parallel
Strand 3
A
431 432parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
480 481anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il