Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LHQ entry

There are 2 chains in PDB entry 5LHQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16GLY 243
B
 GLN 1ALA 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5LHQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 59Right-handed 310
Helix 2
AA2
A
61 62Right-handed 310
Helix 3
AA3
A
77 81Right-handed alpha
Helix 4
AA4
A
164 169Right-handed alpha
Helix 5
AA5
A
172 176Right-handed 310
Helix 6
AA6
A
234 241Right-handed alpha
Helix 7
AA7
B
28 32Right-handed 310
Helix 8
AA8
B
62 65Right-handed 310
Helix 9
AA9
B
87 91Right-handed 310
Helix 10
AB1
B
109 114Right-handed alpha
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There are 6 sheets in PDB entry 5LHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
156 163anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
226 230anti-parallel
Strand 5
A
207 215anti-parallel
Strand 6
A
198 202anti-parallel
Strand 7
A
135 140anti-parallel
Strand 8
A
156 163anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
39 48anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
82 90anti-parallel
Strand 6
A
64 67anti-parallel
Strand 7
A
30 35anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
99 100anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
127 131parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
127 131parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
122 123anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il