Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LHS entry

There are 4 chains in PDB entry 5LHS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 25	GLY 243
A	GLU 25	GLY 243
C	GLU 25	GLY 243
D	GLU 25	GLY 243

There are 16 helices in PDB entry 5LHS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	55	59	Right-handed 310
Helix 2	AA2	B	61	62	Right-handed 310
Helix 3	AA3	B	170	172	Right-handed 310
Helix 4	AA4	B	234	243	Right-handed alpha
Helix 5	AA5	A	56	59	Right-handed 310
Helix 6	AA6	A	61	62	Right-handed 310
Helix 7	AA7	A	170	172	Right-handed 310
Helix 8	AA8	A	234	243	Right-handed alpha
Helix 9	AA9	C	55	59	Right-handed 310
Helix 10	AB1	C	61	62	Right-handed 310
Helix 11	AB2	C	164	169	Right-handed alpha
Helix 12	AB3	C	234	243	Right-handed alpha
Helix 13	AB4	D	56	59	Right-handed 310
Helix 14	AB5	D	61	62	Right-handed 310
Helix 15	AB6	D	165	170	Right-handed alpha
Helix 16	AB7	D	234	243	Right-handed alpha

There are 12 sheets in PDB entry 5LHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	39	48	anti-parallel
Strand 3	B	51	54	anti-parallel
Strand 4	B	104	109	anti-parallel
Strand 5	B	81	90	anti-parallel
Strand 6	B	64	68	anti-parallel
Strand 7	B	30	35	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	99	100	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	140	first strand
Strand 2	B	156	163	anti-parallel
Strand 3	B	179	183	parallel
Strand 4	B	226	230	parallel
Strand 5	B	206	215	anti-parallel
Strand 6	B	195	203	anti-parallel
Strand 7	B	134	140	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	39	48	anti-parallel
Strand 3	A	51	54	anti-parallel
Strand 4	A	104	109	anti-parallel
Strand 5	A	81	90	anti-parallel
Strand 6	A	64	68	anti-parallel
Strand 7	A	30	35	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	99	100	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	139	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	179	183	parallel
Strand 4	A	226	230	parallel
Strand 5	A	206	215	anti-parallel
Strand 6	A	195	203	anti-parallel
Strand 7	A	134	139	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	30	35	anti-parallel
Strand 3	C	64	68	anti-parallel
Strand 4	C	81	90	anti-parallel
Strand 5	C	104	109	anti-parallel
Strand 6	C	51	54	anti-parallel
Strand 7	C	44	48	anti-parallel
Strand 8	C	30	35	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	99	100	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	140	first strand
Strand 2	C	156	163	anti-parallel
Strand 3	C	179	183	parallel
Strand 4	C	226	230	parallel
Strand 5	C	206	215	anti-parallel
Strand 6	C	195	203	anti-parallel
Strand 7	C	134	140	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	42	48	anti-parallel
Strand 3	D	51	54	anti-parallel
Strand 4	D	104	109	anti-parallel
Strand 5	D	81	90	anti-parallel
Strand 6	D	64	68	anti-parallel
Strand 7	D	30	35	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	99	100	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	140	first strand
Strand 2	D	156	163	anti-parallel
Strand 3	D	179	183	parallel
Strand 4	D	226	230	parallel
Strand 5	D	206	215	anti-parallel
Strand 6	D	195	203	anti-parallel
Strand 7	D	134	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LHS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LHS