Analysis of interatomic Contacts of Structural Units in PDB entry:
5LI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LI1 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5LI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 246SER 411
A
 PHE 413ARG 483
A
 LEU 485LEU 563
A
 PRO 565LEU 589
B
 LEU 1GLN 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5LI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
250 252Right-handed 310
Helix 2
AA2
A
288 290Right-handed 310
Helix 3
AA3
A
292 310Right-handed alpha
Helix 4
AA4
A
339 348Right-handed alpha
Helix 5
AA5
A
351 372Right-handed alpha
Helix 6
AA6
A
380 382Right-handed 310
Helix 7
AA7
A
416 420Right-handed 310
Helix 8
AA8
A
421 426Right-handed alpha
Helix 9
AA9
A
432 449Right-handed alpha
Helix 10
AB1
A
467 477Right-handed alpha
Helix 11
AB2
A
486 497Right-handed alpha
Helix 12
AB3
A
511 518Right-handed alpha
Helix 13
AB4
A
519 523Right-handed 310
Helix 14
AB5
A
526 531Right-handed alpha
Helix 15
AB6
A
545 552Right-handed 310
Helix 16
AB7
A
553 558Right-handed alpha
Helix 17
AB8
A
567 572Right-handed alpha
Helix 18
AB9
A
573 574Right-handed 310
Helix 19
AC1
A
575 580Right-handed 310
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There are 3 sheets in PDB entry 5LI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 262first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
279 286anti-parallel
Strand 4
A
327 332anti-parallel
Strand 5
A
318 323anti-parallel
Strand 6
A
584 585anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
392 394anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
B
13 14anti-parallel
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