Analysis of interatomic Contacts of Structural Units in PDB entry:
5LI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LI3 entry

There are 2 chains in PDB entry 5LI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LEU 376
B
 ARG 3LEU 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5LI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed 310
Helix 2
AA2
A
42 56Right-handed alpha
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
71 77Right-handed alpha
Helix 5
AA5
A
80 94Right-handed alpha
Helix 6
AA6
A
107 128Right-handed alpha
Helix 7
AA7
A
157 171Right-handed alpha
Helix 8
AA8
A
185 192Right-handed alpha
Helix 9
AA9
A
221 225Right-handed 310
Helix 10
AB1
A
238 249Right-handed alpha
Helix 11
AB2
A
249 258Right-handed alpha
Helix 12
AB3
A
282 301Right-handed alpha
Helix 13
AB4
A
317 331Right-handed alpha
Helix 14
AB5
A
340 347Right-handed alpha
Helix 15
AB6
A
350 369Right-handed alpha
Helix 16
AB7
B
10 16Right-handed 310
Helix 17
AB8
B
42 56Right-handed alpha
Helix 18
AB9
B
58 62Right-handed 310
Helix 19
AC1
B
71 77Right-handed alpha
Helix 20
AC2
B
80 94Right-handed alpha
Helix 21
AC3
B
107 128Right-handed alpha
Helix 22
AC4
B
157 171Right-handed alpha
Helix 23
AC5
B
185 192Right-handed alpha
Helix 24
AC6
B
221 225Right-handed 310
Helix 25
AC7
B
238 249Right-handed alpha
Helix 26
AC8
B
249 258Right-handed alpha
Helix 27
AC9
B
282 301Right-handed alpha
Helix 28
AD1
B
317 331Right-handed alpha
Helix 29
AD2
B
340 347Right-handed alpha
Helix 30
AD3
B
350 369Right-handed alpha
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There are 6 sheets in PDB entry 5LI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
5 8parallel
Strand 3
A
133 136parallel
Strand 4
A
305 309parallel
Strand 5
A
261 266parallel
Strand 6
A
175 179parallel
Strand 7
A
198 205parallel
Strand 8
A
228 233parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
25 26anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
102 104anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
5 8parallel
Strand 3
B
133 136parallel
Strand 4
B
305 309parallel
Strand 5
B
261 266parallel
Strand 6
B
175 179parallel
Strand 7
B
198 205parallel
Strand 8
B
228 233parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
25 26anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
102 104anti-parallel
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