Analysis of interatomic Contacts of Structural Units in PDB entry:
5LI4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LI4 entry

There are 6 chains in PDB entry 5LI4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 31	VAL 579
B	SER 31	VAL 579
C	SER 31	VAL 579
D	SER 31	VAL 579
E	SER 31	VAL 579
F	SER 31	VAL 579

There are 72 helices in PDB entry 5LI4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	63	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	150	169	Right-handed alpha
Helix 4	AA4	A	278	285	Right-handed alpha
Helix 5	AA5	A	320	327	Right-handed alpha
Helix 6	AA6	A	342	353	Right-handed alpha
Helix 7	AA7	A	370	382	Right-handed alpha
Helix 8	AA8	A	413	420	Right-handed alpha
Helix 9	AA9	A	446	452	Right-handed alpha
Helix 10	AB1	A	493	507	Right-handed alpha
Helix 11	AB2	A	508	515	Right-handed alpha
Helix 12	AB3	A	518	540	Right-handed alpha
Helix 13	AB4	B	56	63	Right-handed alpha
Helix 14	AB5	B	70	82	Right-handed alpha
Helix 15	AB6	B	150	169	Right-handed alpha
Helix 16	AB7	B	278	285	Right-handed alpha
Helix 17	AB8	B	320	327	Right-handed alpha
Helix 18	AB9	B	342	353	Right-handed alpha
Helix 19	AC1	B	370	382	Right-handed alpha
Helix 20	AC2	B	413	420	Right-handed alpha
Helix 21	AC3	B	446	452	Right-handed alpha
Helix 22	AC4	B	493	507	Right-handed alpha
Helix 23	AC5	B	508	515	Right-handed alpha
Helix 24	AC6	B	518	540	Right-handed alpha
Helix 25	AC7	C	56	63	Right-handed alpha
Helix 26	AC8	C	70	82	Right-handed alpha
Helix 27	AC9	C	150	169	Right-handed alpha
Helix 28	AD1	C	278	285	Right-handed alpha
Helix 29	AD2	C	320	327	Right-handed alpha
Helix 30	AD3	C	342	353	Right-handed alpha
Helix 31	AD4	C	370	382	Right-handed alpha
Helix 32	AD5	C	413	420	Right-handed alpha
Helix 33	AD6	C	446	452	Right-handed alpha
Helix 34	AD7	C	493	507	Right-handed alpha
Helix 35	AD8	C	508	515	Right-handed alpha
Helix 36	AD9	C	518	540	Right-handed alpha
Helix 37	AE1	D	56	63	Right-handed alpha
Helix 38	AE2	D	70	82	Right-handed alpha
Helix 39	AE3	D	150	169	Right-handed alpha
Helix 40	AE4	D	278	285	Right-handed alpha
Helix 41	AE5	D	320	327	Right-handed alpha
Helix 42	AE6	D	342	353	Right-handed alpha
Helix 43	AE7	D	370	382	Right-handed alpha
Helix 44	AE8	D	413	420	Right-handed alpha
Helix 45	AE9	D	446	452	Right-handed alpha
Helix 46	AF1	D	493	507	Right-handed alpha
Helix 47	AF2	D	508	515	Right-handed alpha
Helix 48	AF3	D	518	540	Right-handed alpha
Helix 49	AF4	E	56	63	Right-handed alpha
Helix 50	AF5	E	70	82	Right-handed alpha
Helix 51	AF6	E	150	169	Right-handed alpha
Helix 52	AF7	E	278	285	Right-handed alpha
Helix 53	AF8	E	320	327	Right-handed alpha
Helix 54	AF9	E	342	353	Right-handed alpha
Helix 55	AG1	E	370	382	Right-handed alpha
Helix 56	AG2	E	413	420	Right-handed alpha
Helix 57	AG3	E	446	452	Right-handed alpha
Helix 58	AG4	E	493	507	Right-handed alpha
Helix 59	AG5	E	508	515	Right-handed alpha
Helix 60	AG6	E	518	540	Right-handed alpha
Helix 61	AG7	F	56	63	Right-handed alpha
Helix 62	AG8	F	70	82	Right-handed alpha
Helix 63	AG9	F	150	169	Right-handed alpha
Helix 64	AH1	F	278	285	Right-handed alpha
Helix 65	AH2	F	320	327	Right-handed alpha
Helix 66	AH3	F	342	353	Right-handed alpha
Helix 67	AH4	F	370	382	Right-handed alpha
Helix 68	AH5	F	413	420	Right-handed alpha
Helix 69	AH6	F	446	452	Right-handed alpha
Helix 70	AH7	F	493	507	Right-handed alpha
Helix 71	AH8	F	508	515	Right-handed alpha
Helix 72	AH9	F	518	540	Right-handed alpha

There are 42 sheets in PDB entry 5LI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	87	88	anti-parallel
Strand 3	A	36	37	parallel
Strand 4	A	334	335	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	91	92	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	193	194	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	147	first strand
Strand 2	A	127	137	anti-parallel
Strand 3	A	118	123	anti-parallel
Strand 4	A	179	183	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	253	first strand
Strand 2	A	256	264	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	462	first strand
Strand 2	A	467	469	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	565	first strand
Strand 2	A	574	578	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	87	88	anti-parallel
Strand 3	B	36	37	parallel
Strand 4	B	334	335	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	91	92	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	193	194	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	127	137	anti-parallel
Strand 3	B	118	123	anti-parallel
Strand 4	B	179	183	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	253	first strand
Strand 2	B	256	264	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	462	first strand
Strand 2	B	467	469	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	565	first strand
Strand 2	B	574	578	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	87	88	anti-parallel
Strand 3	C	36	37	parallel
Strand 4	C	334	335	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	91	92	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	193	194	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	127	137	anti-parallel
Strand 3	C	118	123	anti-parallel
Strand 4	C	179	183	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	253	first strand
Strand 2	C	256	264	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	462	first strand
Strand 2	C	467	469	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	561	565	first strand
Strand 2	C	574	578	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	87	88	anti-parallel
Strand 3	D	36	37	parallel
Strand 4	D	334	335	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	91	92	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	193	194	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	127	137	anti-parallel
Strand 3	D	118	123	anti-parallel
Strand 4	D	179	183	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	253	first strand
Strand 2	D	256	264	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	460	462	first strand
Strand 2	D	467	469	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	561	565	first strand
Strand 2	D	574	578	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	87	88	anti-parallel
Strand 3	E	36	37	parallel
Strand 4	E	334	335	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	91	92	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	108	first strand
Strand 2	E	193	194	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	147	first strand
Strand 2	E	127	137	anti-parallel
Strand 3	E	118	123	anti-parallel
Strand 4	E	179	183	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	253	first strand
Strand 2	E	256	264	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	460	462	first strand
Strand 2	E	467	469	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	561	565	first strand
Strand 2	E	574	578	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	87	88	anti-parallel
Strand 3	F	36	37	parallel
Strand 4	F	334	335	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	91	92	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	108	first strand
Strand 2	F	193	194	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	147	first strand
Strand 2	F	127	137	anti-parallel
Strand 3	F	118	123	anti-parallel
Strand 4	F	179	183	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	253	first strand
Strand 2	F	256	264	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	460	462	first strand
Strand 2	F	467	469	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	561	565	first strand
Strand 2	F	574	578	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LI4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LI4