Analysis of interatomic Contacts of Structural Units in PDB entry:
5LI7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LI7 entry

There are 2 chains in PDB entry 5LI7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7ARG 412
B
 LEU 7ARG 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5LI7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
23 34Right-handed alpha
Helix 3
AA3
A
45 49Right-handed 310
Helix 4
AA4
A
56 65Right-handed alpha
Helix 5
AA5
A
94 98Right-handed 310
Helix 6
AA6
A
101 113Right-handed alpha
Helix 7
AA7
A
115 136Right-handed alpha
Helix 8
AA8
A
145 149Right-handed alpha
Helix 9
AA9
A
151 162Right-handed alpha
Helix 10
AB1
A
165 168Right-handed 310
Helix 11
AB2
A
169 174Right-handed alpha
Helix 12
AB3
A
202 216Right-handed alpha
Helix 13
AB4
A
220 227Right-handed alpha
Helix 14
AB5
A
239 256Right-handed alpha
Helix 15
AB6
A
256 271Right-handed alpha
Helix 16
AB7
A
272 282Right-handed alpha
Helix 17
AB8
A
285 298Right-handed alpha
Helix 18
AB9
A
327 332Right-handed alpha
Helix 19
AC1
A
365 384Right-handed alpha
Helix 20
AC2
B
14 19Right-handed 310
Helix 21
AC3
B
23 34Right-handed alpha
Helix 22
AC4
B
45 49Right-handed 310
Helix 23
AC5
B
56 65Right-handed alpha
Helix 24
AC6
B
94 98Right-handed 310
Helix 25
AC7
B
101 113Right-handed alpha
Helix 26
AC8
B
115 136Right-handed alpha
Helix 27
AC9
B
145 149Right-handed alpha
Helix 28
AD1
B
151 162Right-handed alpha
Helix 29
AD2
B
165 167Right-handed 310
Helix 30
AD3
B
168 175Right-handed alpha
Helix 31
AD4
B
203 216Right-handed alpha
Helix 32
AD5
B
220 227Right-handed alpha
Helix 33
AD6
B
239 256Right-handed alpha
Helix 34
AD7
B
256 271Right-handed alpha
Helix 35
AD8
B
272 282Right-handed alpha
Helix 36
AD9
B
285 298Right-handed alpha
Helix 37
AE1
B
327 332Right-handed alpha
Helix 38
AE2
B
365 384Right-handed alpha
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There are 8 sheets in PDB entry 5LI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
323 326parallel
Strand 4
A
303 307anti-parallel
Strand 5
A
70 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
408 412anti-parallel
Strand 3
A
386 389anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 313first strand
Strand 2
A
316 318anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
404 406anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
51 54anti-parallel
Strand 3
B
323 326parallel
Strand 4
B
303 307anti-parallel
Strand 5
B
70 71anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
408 412anti-parallel
Strand 3
B
386 389anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 313first strand
Strand 2
B
316 318anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 395first strand
Strand 2
B
404 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il