Analysis of interatomic Contacts of Structural Units in PDB entry:
5LID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LID entry

There are 4 chains in PDB entry 5LID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	ILE 317
B	PRO 11	ILE 317
C	PRO 11	ILE 317
D	PRO 11	VAL 314

There are 98 helices in PDB entry 5LID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	68	Right-handed alpha
Helix 2	AA2	A	118	122	Right-handed 310
Helix 3	AA3	A	201	208	Right-handed alpha
Helix 4	AA4	A	208	221	Right-handed alpha
Helix 5	AA5	A	222	225	Right-handed 310
Helix 6	AA6	A	227	253	Right-handed alpha
Helix 7	AA7	A	260	286	Right-handed alpha
Helix 8	AA8	A	296	300	Right-handed 310
Helix 9	AA9	A	303	315	Right-handed alpha
Helix 10	AB1	B	62	69	Right-handed alpha
Helix 11	AB2	B	118	121	Right-handed 310
Helix 12	AB3	B	178	182	Right-handed 310
Helix 13	AB4	B	201	208	Right-handed alpha
Helix 14	AB5	B	208	221	Right-handed alpha
Helix 15	AB6	B	222	225	Right-handed 310
Helix 16	AB7	B	227	253	Right-handed alpha
Helix 17	AB8	B	260	286	Right-handed alpha
Helix 18	AB9	B	303	312	Right-handed alpha
Helix 19	AC1	C	60	68	Right-handed alpha
Helix 20	AC2	C	118	121	Right-handed 310
Helix 21	AC3	C	153	157	Right-handed 310
Helix 22	AC4	C	178	182	Right-handed 310
Helix 23	AC5	C	201	208	Right-handed alpha
Helix 24	AC6	C	208	221	Right-handed alpha
Helix 25	AC7	C	222	225	Right-handed 310
Helix 26	AC8	C	227	253	Right-handed alpha
Helix 27	AC9	C	260	286	Right-handed alpha
Helix 28	AD1	C	296	300	Right-handed 310
Helix 29	AD2	C	303	312	Right-handed alpha
Helix 30	AD3	D	60	68	Right-handed alpha
Helix 31	AD4	D	118	121	Right-handed 310
Helix 32	AD5	D	178	182	Right-handed 310
Helix 33	AD6	D	201	208	Right-handed alpha
Helix 34	AD7	D	208	221	Right-handed alpha
Helix 35	AD8	D	222	225	Right-handed 310
Helix 36	AD9	D	227	253	Right-handed alpha
Helix 37	AE1	D	260	286	Right-handed alpha
Helix 38	AE2	D	296	300	Right-handed 310
Helix 39	AE3	D	303	315	Right-handed alpha
Helix 40	AE4	E	60	68	Right-handed alpha
Helix 41	AE5	E	118	121	Right-handed 310
Helix 42	AE6	E	201	208	Right-handed alpha
Helix 43	AE7	E	208	221	Right-handed alpha
Helix 44	AE8	E	222	225	Right-handed 310
Helix 45	AE9	E	227	253	Right-handed alpha
Helix 46	AF1	E	260	286	Right-handed alpha
Helix 47	AF2	E	296	300	Right-handed 310
Helix 48	AF3	E	303	315	Right-handed alpha
Helix 49	AF4	F	60	68	Right-handed alpha
Helix 50	AF5	F	118	121	Right-handed 310
Helix 51	AF6	F	178	182	Right-handed 310
Helix 52	AF7	F	201	208	Right-handed alpha
Helix 53	AF8	F	208	221	Right-handed alpha
Helix 54	AF9	F	222	225	Right-handed 310
Helix 55	AG1	F	228	253	Right-handed alpha
Helix 56	AG2	F	260	286	Right-handed alpha
Helix 57	AG3	F	296	300	Right-handed 310
Helix 58	AG4	F	303	315	Right-handed alpha
Helix 59	AG5	G	60	69	Right-handed alpha
Helix 60	AG6	G	118	121	Right-handed 310
Helix 61	AG7	G	178	182	Right-handed 310
Helix 62	AG8	G	201	208	Right-handed alpha
Helix 63	AG9	G	208	221	Right-handed alpha
Helix 64	AH1	G	222	225	Right-handed 310
Helix 65	AH2	G	227	253	Right-handed alpha
Helix 66	AH3	G	260	286	Right-handed alpha
Helix 67	AH4	G	296	300	Right-handed 310
Helix 68	AH5	G	303	312	Right-handed alpha
Helix 69	AH6	H	60	68	Right-handed alpha
Helix 70	AH7	H	118	121	Right-handed 310
Helix 71	AH8	H	153	157	Right-handed 310
Helix 72	AH9	H	178	182	Right-handed 310
Helix 73	AI1	H	201	208	Right-handed alpha
Helix 74	AI2	H	208	221	Right-handed alpha
Helix 75	AI3	H	222	225	Right-handed 310
Helix 76	AI4	H	227	253	Right-handed alpha
Helix 77	AI5	H	260	286	Right-handed alpha
Helix 78	AI6	H	296	300	Right-handed 310
Helix 79	AI7	H	303	312	Right-handed alpha
Helix 80	AI8	I	60	68	Right-handed alpha
Helix 81	AI9	I	118	121	Right-handed 310
Helix 82	AJ1	I	178	182	Right-handed 310
Helix 83	AJ2	I	201	208	Right-handed alpha
Helix 84	AJ3	I	208	221	Right-handed alpha
Helix 85	AJ4	I	222	225	Right-handed 310
Helix 86	AJ5	I	227	253	Right-handed alpha
Helix 87	AJ6	I	260	285	Right-handed alpha
Helix 88	AJ7	I	296	300	Right-handed 310
Helix 89	AJ8	I	303	315	Right-handed alpha
Helix 90	AJ9	J	60	68	Right-handed alpha
Helix 91	AK1	J	118	121	Right-handed 310
Helix 92	AK2	J	201	208	Right-handed alpha
Helix 93	AK3	J	208	221	Right-handed alpha
Helix 94	AK4	J	222	225	Right-handed 310
Helix 95	AK5	J	227	253	Right-handed alpha
Helix 96	AK6	J	260	286	Right-handed alpha
Helix 97	AK7	J	296	300	Right-handed 310
Helix 98	AK8	J	303	312	Right-handed alpha

There are 28 sheets in PDB entry 5LID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	100	110	anti-parallel
Strand 4	A	32	43	anti-parallel
Strand 5	A	13	27	anti-parallel
Strand 6	A	139	146	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	125	132	anti-parallel
Strand 3	A	188	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	125	132	anti-parallel
Strand 3	A	188	199	anti-parallel
Strand 4	A	171	173	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	100	110	anti-parallel
Strand 4	B	32	43	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	138	144	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	188	199	anti-parallel
Strand 4	B	160	161	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	188	199	anti-parallel
Strand 4	B	171	173	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	100	111	anti-parallel
Strand 4	C	32	43	anti-parallel
Strand 5	C	12	22	anti-parallel
Strand 6	C	138	146	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	188	198	anti-parallel
Strand 4	C	171	173	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	100	111	anti-parallel
Strand 4	D	32	43	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	138	146	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	188	199	anti-parallel
Strand 4	D	160	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	188	199	anti-parallel
Strand 4	D	171	173	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	100	111	anti-parallel
Strand 4	E	32	43	anti-parallel
Strand 5	E	12	22	anti-parallel
Strand 6	E	138	146	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	188	198	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	59	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	111	anti-parallel
Strand 4	F	32	44	anti-parallel
Strand 5	F	12	27	anti-parallel
Strand 6	F	138	146	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	188	199	anti-parallel
Strand 4	F	160	162	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	188	199	anti-parallel
Strand 4	F	171	173	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	100	111	anti-parallel
Strand 4	G	32	43	anti-parallel
Strand 5	G	12	27	anti-parallel
Strand 6	G	138	146	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	188	199	anti-parallel
Strand 4	G	160	161	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	188	199	anti-parallel
Strand 4	G	171	173	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	86	94	anti-parallel
Strand 3	H	100	111	anti-parallel
Strand 4	H	32	43	anti-parallel
Strand 5	H	12	27	anti-parallel
Strand 6	H	138	146	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	188	199	anti-parallel
Strand 4	H	160	161	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	188	199	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	100	111	anti-parallel
Strand 4	I	32	43	anti-parallel
Strand 5	I	12	27	anti-parallel
Strand 6	I	138	146	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	188	199	anti-parallel
Strand 4	I	160	162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	188	199	anti-parallel
Strand 4	I	171	173	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	100	111	anti-parallel
Strand 4	J	32	43	anti-parallel
Strand 5	J	13	27	anti-parallel
Strand 6	J	139	146	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	188	199	anti-parallel
Strand 4	J	160	161	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	188	199	anti-parallel
Strand 4	J	171	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LID

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LID