Analysis of interatomic Contacts of Structural Units in PDB entry:
5LIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LIE entry

There are 2 chains in PDB entry 5LIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7ARG 412
B
 SER 8ARG 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5LIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed 310
Helix 2
AA2
A
23 34Right-handed alpha
Helix 3
AA3
A
45 49Right-handed 310
Helix 4
AA4
A
56 65Right-handed alpha
Helix 5
AA5
A
94 98Right-handed 310
Helix 6
AA6
A
101 113Right-handed alpha
Helix 7
AA7
A
115 136Right-handed alpha
Helix 8
AA8
A
145 149Right-handed alpha
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
165 167Right-handed 310
Helix 11
AB2
A
168 176Right-handed alpha
Helix 12
AB3
A
196 216Right-handed alpha
Helix 13
AB4
A
220 227Right-handed alpha
Helix 14
AB5
A
239 256Right-handed alpha
Helix 15
AB6
A
256 272Right-handed alpha
Helix 16
AB7
A
272 281Right-handed alpha
Helix 17
AB8
A
282 284Right-handed 310
Helix 18
AB9
A
285 298Right-handed alpha
Helix 19
AC1
A
327 332Right-handed alpha
Helix 20
AC2
A
365 384Right-handed alpha
Helix 21
AC3
B
14 19Right-handed 310
Helix 22
AC4
B
23 34Right-handed alpha
Helix 23
AC5
B
45 49Right-handed 310
Helix 24
AC6
B
56 65Right-handed alpha
Helix 25
AC7
B
94 98Right-handed 310
Helix 26
AC8
B
101 112Right-handed alpha
Helix 27
AC9
B
115 136Right-handed alpha
Helix 28
AD1
B
145 149Right-handed alpha
Helix 29
AD2
B
151 162Right-handed alpha
Helix 30
AD3
B
165 177Right-handed alpha
Helix 31
AD4
B
194 198Right-handed 310
Helix 32
AD5
B
200 216Right-handed alpha
Helix 33
AD6
B
220 227Right-handed alpha
Helix 34
AD7
B
239 254Right-handed alpha
Helix 35
AD8
B
254 271Right-handed alpha
Helix 36
AD9
B
272 281Right-handed alpha
Helix 37
AE1
B
282 284Right-handed 310
Helix 38
AE2
B
285 298Right-handed alpha
Helix 39
AE3
B
327 332Right-handed alpha
Helix 40
AE4
B
365 382Right-handed alpha
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There are 9 sheets in PDB entry 5LIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
323 326parallel
Strand 4
A
303 307anti-parallel
Strand 5
A
70 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
408 412anti-parallel
Strand 3
A
386 389anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 313first strand
Strand 2
A
316 318anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
404 406anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
51 54anti-parallel
Strand 3
B
323 326parallel
Strand 4
B
303 307anti-parallel
Strand 5
B
70 71anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
408 412anti-parallel
Strand 3
B
386 389anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
185 187anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 313first strand
Strand 2
B
316 318anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 395first strand
Strand 2
B
404 406anti-parallel
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