Analysis of interatomic Contacts of Structural Units in PDB entry:
5LIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LIH entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 5LIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 248SER 411
A
 PHE 413LEU 563
A
 PRO 565LEU 588
B
 LEU 249SER 411
B
 PHE 413LEU 563
B
 PRO 565LEU 588
F
 ARG 2ARG 14
G
 PRO 5ARG 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5LIH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
250 252Right-handed 310
Helix 2
AA2
A
300 310Right-handed alpha
Helix 3
AA3
A
341 346Right-handed alpha
Helix 4
AA4
A
351 371Right-handed alpha
Helix 5
AA5
A
421 426Right-handed alpha
Helix 6
AA6
A
432 449Right-handed alpha
Helix 7
AA7
A
466 477Right-handed alpha
Helix 8
AA8
A
486 497Right-handed alpha
Helix 9
AA9
A
511 519Right-handed alpha
Helix 10
AB1
A
520 523Right-handed 310
Helix 11
AB2
A
526 532Right-handed alpha
Helix 12
AB3
A
545 552Right-handed 310
Helix 13
AB4
A
570 574Right-handed 310
Helix 14
AB5
A
575 579Right-handed 310
Helix 15
AB6
B
250 252Right-handed 310
Helix 16
AB7
B
301 310Right-handed alpha
Helix 17
AB8
B
341 346Right-handed alpha
Helix 18
AB9
B
351 371Right-handed alpha
Helix 19
AC1
B
380 382Right-handed 310
Helix 20
AC2
B
421 426Right-handed alpha
Helix 21
AC3
B
432 449Right-handed alpha
Helix 22
AC4
B
467 477Right-handed alpha
Helix 23
AC5
B
486 497Right-handed alpha
Helix 24
AC6
B
511 519Right-handed alpha
Helix 25
AC7
B
520 524Right-handed 310
Helix 26
AC8
B
526 532Right-handed alpha
Helix 27
AC9
B
545 552Right-handed 310
Helix 28
AD1
B
570 574Right-handed 310
Helix 29
AD2
B
575 579Right-handed 310
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There are 6 sheets in PDB entry 5LIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 262first strand
Strand 2
A
266 273anti-parallel
Strand 3
A
279 286anti-parallel
Strand 4
A
327 332anti-parallel
Strand 5
A
318 323anti-parallel
Strand 6
A
584 585anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
392 394anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
F
12 13anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 262first strand
Strand 2
B
266 273anti-parallel
Strand 3
B
279 286anti-parallel
Strand 4
B
327 332anti-parallel
Strand 5
B
318 323anti-parallel
Strand 6
B
584 585anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 386first strand
Strand 2
B
392 394anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 415first strand
Strand 2
G
12 13anti-parallel
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