Analysis of interatomic Contacts of Structural Units in PDB entry:
5LIL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LIL entry

There are 2 chains in PDB entry 5LIL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 642
B	MET 1	ALA 642

There are 46 helices in PDB entry 5LIL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	54	Right-handed alpha
Helix 2	AA2	A	75	86	Right-handed alpha
Helix 3	AA3	A	101	108	Right-handed alpha
Helix 4	AA4	A	109	111	Right-handed 310
Helix 5	AA5	A	116	131	Right-handed alpha
Helix 6	AA6	A	133	137	Right-handed 310
Helix 7	AA7	A	140	144	Right-handed 310
Helix 8	AA8	A	145	158	Right-handed alpha
Helix 9	AA9	A	175	192	Right-handed alpha
Helix 10	AB1	A	202	208	Right-handed alpha
Helix 11	AB2	A	247	264	Right-handed alpha
Helix 12	AB3	A	264	302	Right-handed alpha
Helix 13	AB4	A	328	336	Right-handed alpha
Helix 14	AB5	A	372	377	Right-handed alpha
Helix 15	AB6	A	388	395	Right-handed alpha
Helix 16	AB7	A	402	408	Right-handed alpha
Helix 17	AB8	A	452	459	Right-handed alpha
Helix 18	AB9	A	477	491	Right-handed alpha
Helix 19	AC1	A	504	546	Right-handed alpha
Helix 20	AC2	A	547	557	Right-handed alpha
Helix 21	AC3	A	560	598	Right-handed alpha
Helix 22	AC4	A	606	634	Right-handed alpha
Helix 23	AC5	A	636	641	Right-handed alpha
Helix 24	AC6	B	45	55	Right-handed alpha
Helix 25	AC7	B	75	86	Right-handed alpha
Helix 26	AC8	B	101	108	Right-handed alpha
Helix 27	AC9	B	109	111	Right-handed 310
Helix 28	AD1	B	116	131	Right-handed alpha
Helix 29	AD2	B	133	137	Right-handed 310
Helix 30	AD3	B	140	144	Right-handed 310
Helix 31	AD4	B	145	160	Right-handed alpha
Helix 32	AD5	B	175	192	Right-handed alpha
Helix 33	AD6	B	202	208	Right-handed alpha
Helix 34	AD7	B	248	264	Right-handed alpha
Helix 35	AD8	B	264	302	Right-handed alpha
Helix 36	AD9	B	328	336	Right-handed alpha
Helix 37	AE1	B	372	377	Right-handed alpha
Helix 38	AE2	B	388	394	Right-handed alpha
Helix 39	AE3	B	403	410	Right-handed alpha
Helix 40	AE4	B	452	458	Right-handed alpha
Helix 41	AE5	B	477	491	Right-handed alpha
Helix 42	AE6	B	504	546	Right-handed alpha
Helix 43	AE7	B	547	557	Right-handed alpha
Helix 44	AE8	B	560	598	Right-handed alpha
Helix 45	AE9	B	606	634	Right-handed alpha
Helix 46	AF1	B	636	641	Right-handed alpha

There are 9 sheets in PDB entry 5LIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	31	first strand
Strand 2	A	2	13	anti-parallel
Strand 3	A	61	66	anti-parallel
Strand 4	A	69	70	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	164	168	parallel
Strand 3	A	195	199	parallel
Strand 4	A	35	40	parallel
Strand 5	A	211	216	parallel
Strand 6	A	219	225	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	309	first strand
Strand 2	A	467	472	anti-parallel
Strand 3	A	341	347	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	447	451	parallel
Strand 4	A	398	401	anti-parallel
Strand 5	A	426	432	parallel
Strand 6	A	419	421	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	31	first strand
Strand 2	B	2	13	anti-parallel
Strand 3	B	61	66	anti-parallel
Strand 4	B	69	70	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	164	168	parallel
Strand 3	B	195	199	parallel
Strand 4	B	35	40	parallel
Strand 5	B	211	216	parallel
Strand 6	B	219	222	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	341	347	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	447	451	parallel
Strand 4	B	398	402	anti-parallel
Strand 5	B	426	433	parallel
Strand 6	B	381	384	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	447	451	parallel
Strand 4	B	398	402	anti-parallel
Strand 5	B	426	433	parallel
Strand 6	B	419	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LIL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LIL