Analysis of interatomic Contacts of Structural Units in PDB entry:
5LIQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LIQ entry

There are 2 chains in PDB entry 5LIQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 604
B
 ALA 2PHE 604
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5LIQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
18 28Right-handed alpha
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
39 52Right-handed alpha
Helix 5
AA5
A
53 58Right-handed alpha
Helix 6
AA6
A
68 79Right-handed alpha
Helix 7
AA7
A
93 101Right-handed alpha
Helix 8
AA8
A
104 116Right-handed alpha
Helix 9
AA9
A
124 128Right-handed 310
Helix 10
AB1
A
136 149Right-handed alpha
Helix 11
AB2
A
153 160Right-handed alpha
Helix 12
AB3
A
165 167Right-handed 310
Helix 13
AB4
A
168 186Right-handed alpha
Helix 14
AB5
A
188 208Right-handed alpha
Helix 15
AB6
A
223 248Right-handed alpha
Helix 16
AB7
A
264 275Right-handed alpha
Helix 17
AB8
A
283 292Right-handed alpha
Helix 18
AB9
A
303 326Right-handed alpha
Helix 19
AC1
A
329 331Right-handed 310
Helix 20
AC2
A
332 345Right-handed alpha
Helix 21
AC3
A
346 348Right-handed 310
Helix 22
AC4
A
351 378Right-handed alpha
Helix 23
AC5
A
380 394Right-handed alpha
Helix 24
AC6
A
397 407Right-handed alpha
Helix 25
AC7
A
412 429Right-handed alpha
Helix 26
AC8
A
474 500Right-handed alpha
Helix 27
AC9
A
516 531Right-handed alpha
Helix 28
AD1
A
539 554Right-handed alpha
Helix 29
AD2
A
560 578Right-handed alpha
Helix 30
AD3
A
581 601Right-handed alpha
Helix 31
AD4
B
15 17Right-handed 310
Helix 32
AD5
B
18 28Right-handed alpha
Helix 33
AD6
B
36 38Right-handed 310
Helix 34
AD7
B
39 52Right-handed alpha
Helix 35
AD8
B
53 58Right-handed alpha
Helix 36
AD9
B
68 79Right-handed alpha
Helix 37
AE1
B
93 101Right-handed alpha
Helix 38
AE2
B
104 116Right-handed alpha
Helix 39
AE3
B
136 149Right-handed alpha
Helix 40
AE4
B
152 160Right-handed alpha
Helix 41
AE5
B
165 167Right-handed 310
Helix 42
AE6
B
168 184Right-handed alpha
Helix 43
AE7
B
188 208Right-handed alpha
Helix 44
AE8
B
223 248Right-handed alpha
Helix 45
AE9
B
264 275Right-handed alpha
Helix 46
AF1
B
283 292Right-handed alpha
Helix 47
AF2
B
303 326Right-handed alpha
Helix 48
AF3
B
329 331Right-handed 310
Helix 49
AF4
B
332 345Right-handed alpha
Helix 50
AF5
B
346 348Right-handed 310
Helix 51
AF6
B
351 378Right-handed alpha
Helix 52
AF7
B
380 393Right-handed alpha
Helix 53
AF8
B
394 396Right-handed 310
Helix 54
AF9
B
397 407Right-handed alpha
Helix 55
AG1
B
412 429Right-handed alpha
Helix 56
AG2
B
474 501Right-handed alpha
Helix 57
AG3
B
516 530Right-handed alpha
Helix 58
AG4
B
539 555Right-handed alpha
Helix 59
AG5
B
560 578Right-handed alpha
Helix 60
AG6
B
581 601Right-handed alpha
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There are 8 sheets in PDB entry 5LIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
90 92anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
251 254anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
457 460anti-parallel
Strand 3
A
464 470anti-parallel
Strand 4
A
505 512parallel
Strand 5
A
534 538parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
446 448anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
90 92anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
257 260anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 436first strand
Strand 2
B
457 460anti-parallel
Strand 3
B
464 470anti-parallel
Strand 4
B
505 512parallel
Strand 5
B
534 538parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 440first strand
Strand 2
B
446 448anti-parallel
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