Analysis of interatomic Contacts of Structural Units in PDB entry:
5LIV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LIV entry

There are 4 chains in PDB entry 5LIV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 49	HIS 446
B	MET 51	HIS 446
C	MET 51	HIS 445
D	ASP 52	HIS 446

There are 82 helices in PDB entry 5LIV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	80	Right-handed alpha
Helix 2	AA2	A	95	105	Right-handed alpha
Helix 3	AA3	A	111	117	Right-handed 310
Helix 4	AA4	A	127	141	Right-handed alpha
Helix 5	AA5	A	143	154	Right-handed alpha
Helix 6	AA6	A	154	165	Right-handed alpha
Helix 7	AA7	A	173	178	Right-handed alpha
Helix 8	AA8	A	180	192	Right-handed alpha
Helix 9	AA9	A	194	200	Right-handed alpha
Helix 10	AB1	A	201	214	Right-handed alpha
Helix 11	AB2	A	217	243	Right-handed alpha
Helix 12	AB3	A	249	261	Right-handed alpha
Helix 13	AB4	A	265	281	Right-handed alpha
Helix 14	AB5	A	281	297	Right-handed alpha
Helix 15	AB6	A	298	308	Right-handed alpha
Helix 16	AB7	A	311	323	Right-handed alpha
Helix 17	AB8	A	354	358	Right-handed 310
Helix 18	AB9	A	380	384	Right-handed 310
Helix 19	AC1	A	385	389	Right-handed 310
Helix 20	AC2	A	392	411	Right-handed alpha
Helix 21	AC3	A	428	431	Right-handed 310
Helix 22	AC4	B	67	80	Right-handed alpha
Helix 23	AC5	B	95	105	Right-handed alpha
Helix 24	AC6	B	111	115	Right-handed 310
Helix 25	AC7	B	127	141	Right-handed alpha
Helix 26	AC8	B	143	154	Right-handed alpha
Helix 27	AC9	B	154	165	Right-handed alpha
Helix 28	AD1	B	174	178	Right-handed alpha
Helix 29	AD2	B	180	192	Right-handed alpha
Helix 30	AD3	B	194	196	Right-handed 310
Helix 31	AD4	B	197	212	Right-handed alpha
Helix 32	AD5	B	219	240	Right-handed alpha
Helix 33	AD6	B	249	261	Right-handed alpha
Helix 34	AD7	B	265	281	Right-handed alpha
Helix 35	AD8	B	282	297	Right-handed alpha
Helix 36	AD9	B	298	308	Right-handed alpha
Helix 37	AE1	B	311	323	Right-handed alpha
Helix 38	AE2	B	354	358	Right-handed 310
Helix 39	AE3	B	380	384	Right-handed 310
Helix 40	AE4	B	385	389	Right-handed 310
Helix 41	AE5	B	392	411	Right-handed alpha
Helix 42	AE6	B	428	431	Right-handed 310
Helix 43	AE7	C	67	80	Right-handed alpha
Helix 44	AE8	C	95	105	Right-handed alpha
Helix 45	AE9	C	111	117	Right-handed 310
Helix 46	AF1	C	127	141	Right-handed alpha
Helix 47	AF2	C	143	154	Right-handed alpha
Helix 48	AF3	C	154	165	Right-handed alpha
Helix 49	AF4	C	173	178	Right-handed alpha
Helix 50	AF5	C	180	192	Right-handed alpha
Helix 51	AF6	C	194	200	Right-handed alpha
Helix 52	AF7	C	201	214	Right-handed alpha
Helix 53	AF8	C	217	244	Right-handed alpha
Helix 54	AF9	C	249	261	Right-handed alpha
Helix 55	AG1	C	265	281	Right-handed alpha
Helix 56	AG2	C	281	297	Right-handed alpha
Helix 57	AG3	C	298	308	Right-handed alpha
Helix 58	AG4	C	311	323	Right-handed alpha
Helix 59	AG5	C	354	358	Right-handed 310
Helix 60	AG6	C	385	389	Right-handed 310
Helix 61	AG7	C	392	411	Right-handed alpha
Helix 62	AG8	C	428	431	Right-handed 310
Helix 63	AG9	D	67	80	Right-handed alpha
Helix 64	AH1	D	95	105	Right-handed alpha
Helix 65	AH2	D	111	117	Right-handed 310
Helix 66	AH3	D	127	141	Right-handed alpha
Helix 67	AH4	D	143	154	Right-handed alpha
Helix 68	AH5	D	154	165	Right-handed alpha
Helix 69	AH6	D	173	178	Right-handed alpha
Helix 70	AH7	D	180	192	Right-handed alpha
Helix 71	AH8	D	198	214	Right-handed alpha
Helix 72	AH9	D	217	241	Right-handed alpha
Helix 73	AI1	D	250	261	Right-handed alpha
Helix 74	AI2	D	265	281	Right-handed alpha
Helix 75	AI3	D	281	297	Right-handed alpha
Helix 76	AI4	D	298	308	Right-handed alpha
Helix 77	AI5	D	311	323	Right-handed alpha
Helix 78	AI6	D	354	360	Right-handed 310
Helix 79	AI7	D	380	384	Right-handed 310
Helix 80	AI8	D	385	389	Right-handed 310
Helix 81	AI9	D	392	411	Right-handed alpha
Helix 82	AJ1	D	428	431	Right-handed 310

There are 16 sheets in PDB entry 5LIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	82	85	parallel
Strand 3	A	90	93	anti-parallel
Strand 4	A	349	352	parallel
Strand 5	A	329	333	anti-parallel
Strand 6	A	109	110	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	342	344	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	441	442	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	426	first strand
Strand 2	A	434	436	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	82	85	parallel
Strand 3	B	90	93	anti-parallel
Strand 4	B	349	352	parallel
Strand 5	B	329	333	anti-parallel
Strand 6	B	109	110	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	440	442	anti-parallel
Strand 3	B	415	416	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	342	344	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	426	first strand
Strand 2	B	434	436	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	82	85	parallel
Strand 3	C	90	93	anti-parallel
Strand 4	C	349	352	parallel
Strand 5	C	329	333	anti-parallel
Strand 6	C	109	110	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	342	344	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	416	first strand
Strand 2	C	441	442	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	424	426	first strand
Strand 2	C	434	436	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	82	85	parallel
Strand 3	D	90	93	anti-parallel
Strand 4	D	349	352	parallel
Strand 5	D	329	333	anti-parallel
Strand 6	D	109	110	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	339	first strand
Strand 2	D	342	344	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	416	first strand
Strand 2	D	441	442	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	426	first strand
Strand 2	D	434	436	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LIV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LIV