Analysis of interatomic Contacts of Structural Units in PDB entry:
5LIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LIZ entry

There is 1 chain in PDB entry 5LIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 604
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5LIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
18 28Right-handed alpha
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
39 52Right-handed alpha
Helix 5
AA5
A
73 79Right-handed alpha
Helix 6
AA6
A
93 101Right-handed alpha
Helix 7
AA7
A
104 116Right-handed alpha
Helix 8
AA8
A
136 149Right-handed alpha
Helix 9
AA9
A
152 160Right-handed alpha
Helix 10
AB1
A
165 167Right-handed 310
Helix 11
AB2
A
168 186Right-handed alpha
Helix 12
AB3
A
188 209Right-handed alpha
Helix 13
AB4
A
223 249Right-handed alpha
Helix 14
AB5
A
264 275Right-handed alpha
Helix 15
AB6
A
283 292Right-handed alpha
Helix 16
AB7
A
303 326Right-handed alpha
Helix 17
AB8
A
329 331Right-handed 310
Helix 18
AB9
A
332 344Right-handed alpha
Helix 19
AC1
A
345 348Right-handed 310
Helix 20
AC2
A
351 378Right-handed alpha
Helix 21
AC3
A
380 394Right-handed alpha
Helix 22
AC4
A
397 407Right-handed alpha
Helix 23
AC5
A
412 429Right-handed alpha
Helix 24
AC6
A
474 501Right-handed alpha
Helix 25
AC7
A
516 530Right-handed alpha
Helix 26
AC8
A
539 555Right-handed alpha
Helix 27
AC9
A
560 578Right-handed alpha
Helix 28
AD1
A
581 599Right-handed alpha
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There are 4 sheets in PDB entry 5LIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
90 92anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
257 260anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
457 460anti-parallel
Strand 3
A
464 470anti-parallel
Strand 4
A
505 512parallel
Strand 5
A
534 538parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
446 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il