Analysis of interatomic Contacts of Structural Units in PDB entry:
5LJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LJ6 entry

There is 1 chain in PDB entry 5LJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5LJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 54Right-handed alpha
Helix 2
AA2
A
75 86Right-handed alpha
Helix 3
AA3
A
101 108Right-handed alpha
Helix 4
AA4
A
108 114Right-handed alpha
Helix 5
AA5
A
116 131Right-handed alpha
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
A
145 160Right-handed alpha
Helix 8
AA8
A
175 192Right-handed alpha
Helix 9
AA9
A
202 208Right-handed alpha
Helix 10
AB1
A
247 264Right-handed alpha
Helix 11
AB2
A
264 302Right-handed alpha
Helix 12
AB3
A
329 336Right-handed alpha
Helix 13
AB4
A
372 377Right-handed alpha
Helix 14
AB5
A
388 394Right-handed alpha
Helix 15
AB6
A
403 411Right-handed alpha
Helix 16
AB7
A
452 458Right-handed alpha
Helix 17
AB8
A
477 491Right-handed alpha
Helix 18
AB9
A
504 546Right-handed alpha
Helix 19
AC1
A
547 557Right-handed alpha
Helix 20
AC2
A
560 598Right-handed alpha
Helix 21
AC3
A
606 634Right-handed alpha
Helix 22
AC4
A
636 642Right-handed alpha
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There are 5 sheets in PDB entry 5LJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 31first strand
Strand 2
A
2 13anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
69 70anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
164 168parallel
Strand 3
A
195 199parallel
Strand 4
A
35 40parallel
Strand 5
A
211 216parallel
Strand 6
A
219 222anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 346first strand
Strand 2
A
468 472anti-parallel
Strand 3
A
307 309anti-parallel
Strand 4
A
501 503anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
364 369anti-parallel
Strand 3
A
447 451parallel
Strand 4
A
398 402anti-parallel
Strand 5
A
426 433parallel
Strand 6
A
381 384anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
364 369anti-parallel
Strand 3
A
447 451parallel
Strand 4
A
398 402anti-parallel
Strand 5
A
426 433parallel
Strand 6
A
419 421anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il