Analysis of interatomic Contacts of Structural Units in PDB entry:
5LJ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LJ7 entry

There are 2 chains in PDB entry 5LJ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 643
B	MET 1	GLN 643

There are 45 helices in PDB entry 5LJ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	54	Right-handed alpha
Helix 2	AA2	A	75	86	Right-handed alpha
Helix 3	AA3	A	101	112	Right-handed alpha
Helix 4	AA4	A	116	131	Right-handed alpha
Helix 5	AA5	A	132	137	Right-handed 310
Helix 6	AA6	A	140	144	Right-handed 310
Helix 7	AA7	A	145	158	Right-handed alpha
Helix 8	AA8	A	175	192	Right-handed alpha
Helix 9	AA9	A	202	208	Right-handed alpha
Helix 10	AB1	A	247	264	Right-handed alpha
Helix 11	AB2	A	264	302	Right-handed alpha
Helix 12	AB3	A	328	336	Right-handed alpha
Helix 13	AB4	A	372	377	Right-handed alpha
Helix 14	AB5	A	388	395	Right-handed alpha
Helix 15	AB6	A	402	408	Right-handed alpha
Helix 16	AB7	A	452	456	Right-handed alpha
Helix 17	AB8	A	477	489	Right-handed alpha
Helix 18	AB9	A	490	493	Right-handed 310
Helix 19	AC1	A	504	546	Right-handed alpha
Helix 20	AC2	A	547	557	Right-handed alpha
Helix 21	AC3	A	560	598	Right-handed alpha
Helix 22	AC4	A	608	634	Right-handed alpha
Helix 23	AC5	A	636	642	Right-handed alpha
Helix 24	AC6	B	45	54	Right-handed alpha
Helix 25	AC7	B	75	86	Right-handed alpha
Helix 26	AC8	B	101	114	Right-handed alpha
Helix 27	AC9	B	116	131	Right-handed alpha
Helix 28	AD1	B	133	137	Right-handed 310
Helix 29	AD2	B	140	144	Right-handed 310
Helix 30	AD3	B	145	160	Right-handed alpha
Helix 31	AD4	B	175	192	Right-handed alpha
Helix 32	AD5	B	202	208	Right-handed alpha
Helix 33	AD6	B	248	264	Right-handed alpha
Helix 34	AD7	B	264	302	Right-handed alpha
Helix 35	AD8	B	328	336	Right-handed alpha
Helix 36	AD9	B	372	377	Right-handed alpha
Helix 37	AE1	B	388	394	Right-handed alpha
Helix 38	AE2	B	403	411	Right-handed alpha
Helix 39	AE3	B	452	458	Right-handed alpha
Helix 40	AE4	B	477	491	Right-handed alpha
Helix 41	AE5	B	504	546	Right-handed alpha
Helix 42	AE6	B	547	557	Right-handed alpha
Helix 43	AE7	B	560	598	Right-handed alpha
Helix 44	AE8	B	606	634	Right-handed alpha
Helix 45	AE9	B	636	641	Right-handed alpha

There are 9 sheets in PDB entry 5LJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	31	first strand
Strand 2	A	2	13	anti-parallel
Strand 3	A	61	66	anti-parallel
Strand 4	A	69	70	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	164	168	parallel
Strand 3	A	195	199	parallel
Strand 4	A	35	40	parallel
Strand 5	A	211	216	parallel
Strand 6	A	219	225	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	309	first strand
Strand 2	A	467	472	anti-parallel
Strand 3	A	341	347	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	369	first strand
Strand 2	A	448	451	parallel
Strand 3	A	398	401	anti-parallel
Strand 4	A	428	432	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	31	first strand
Strand 2	B	2	13	anti-parallel
Strand 3	B	61	66	anti-parallel
Strand 4	B	69	70	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	164	168	parallel
Strand 3	B	195	199	parallel
Strand 4	B	35	40	parallel
Strand 5	B	211	216	parallel
Strand 6	B	219	225	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	341	347	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	426	433	anti-parallel
Strand 4	B	398	402	parallel
Strand 5	B	447	451	anti-parallel
Strand 6	B	365	369	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	426	433	anti-parallel
Strand 4	B	381	384	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LJ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LJ7