Analysis of interatomic Contacts of Structural Units in PDB entry:
5LJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LJ8 entry

There are 2 chains in PDB entry 5LJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 310HIS 514
B
 THR 311MET 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5LJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
324 329Right-handed alpha
Helix 2
AA2
A
332 341Right-handed alpha
Helix 3
AA3
A
375 381Right-handed alpha
Helix 4
AA4
A
391 397Right-handed alpha
Helix 5
AA5
A
406 413Right-handed alpha
Helix 6
AA6
A
456 460Right-handed alpha
Helix 7
AA7
A
481 498Right-handed alpha
Helix 8
AA8
B
324 329Right-handed alpha
Helix 9
AA9
B
332 341Right-handed alpha
Helix 10
AB1
B
375 381Right-handed alpha
Helix 11
AB2
B
391 398Right-handed alpha
Helix 12
AB3
B
405 413Right-handed alpha
Helix 13
AB4
B
456 461Right-handed alpha
Helix 14
AB5
B
481 497Right-handed alpha
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There are 4 sheets in PDB entry 5LJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 387first strand
Strand 2
A
429 438anti-parallel
Strand 3
A
401 405parallel
Strand 4
A
451 455anti-parallel
Strand 5
A
363 372parallel
Strand 6
A
345 360anti-parallel
Strand 7
A
466 476anti-parallel
Strand 8
A
311 316anti-parallel
Strand 9
A
502 507anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 387first strand
Strand 2
A
429 438anti-parallel
Strand 3
A
423 426anti-parallel
Strand 4
A
345 360anti-parallel
Strand 5
A
466 476anti-parallel
Strand 6
A
311 316anti-parallel
Strand 7
A
502 507anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 387first strand
Strand 2
B
429 438anti-parallel
Strand 3
B
401 404parallel
Strand 4
B
451 455anti-parallel
Strand 5
B
363 372parallel
Strand 6
B
345 360anti-parallel
Strand 7
B
466 476anti-parallel
Strand 8
B
312 316anti-parallel
Strand 9
B
502 506anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 387first strand
Strand 2
B
429 438anti-parallel
Strand 3
B
423 426anti-parallel
Strand 4
B
345 360anti-parallel
Strand 5
B
466 476anti-parallel
Strand 6
B
312 316anti-parallel
Strand 7
B
502 506anti-parallel
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