Analysis of interatomic Contacts of Structural Units in PDB entry:
5LJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LJ9 entry

There are 3 chains in PDB entry 5LJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 229
B
 THR 2HIS 229
C
 THR 2HIS 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5LJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 55Right-handed alpha
Helix 2
AA2
A
73 75Right-handed 310
Helix 3
AA3
A
76 87Right-handed alpha
Helix 4
AA4
A
102 113Right-handed alpha
Helix 5
AA5
A
117 132Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
141 145Right-handed 310
Helix 8
AA8
A
146 159Right-handed alpha
Helix 9
AA9
A
176 193Right-handed alpha
Helix 10
AB1
A
203 208Right-handed alpha
Helix 11
AB2
B
46 55Right-handed alpha
Helix 12
AB3
B
73 75Right-handed 310
Helix 13
AB4
B
76 87Right-handed alpha
Helix 14
AB5
B
102 114Right-handed alpha
Helix 15
AB6
B
117 132Right-handed alpha
Helix 16
AB7
B
134 138Right-handed 310
Helix 17
AB8
B
141 145Right-handed 310
Helix 18
AB9
B
146 159Right-handed alpha
Helix 19
AC1
B
176 193Right-handed alpha
Helix 20
AC2
B
203 208Right-handed alpha
Helix 21
AC3
C
46 55Right-handed alpha
Helix 22
AC4
C
73 75Right-handed 310
Helix 23
AC5
C
76 87Right-handed alpha
Helix 24
AC6
C
102 114Right-handed alpha
Helix 25
AC7
C
117 132Right-handed alpha
Helix 26
AC8
C
134 138Right-handed 310
Helix 27
AC9
C
141 145Right-handed 310
Helix 28
AD1
C
146 159Right-handed alpha
Helix 29
AD2
C
176 193Right-handed alpha
Helix 30
AD3
C
203 208Right-handed alpha
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There are 6 sheets in PDB entry 5LJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 31first strand
Strand 2
A
5 16anti-parallel
Strand 3
A
62 67anti-parallel
Strand 4
A
70 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
165 169parallel
Strand 3
A
196 201parallel
Strand 4
A
36 40parallel
Strand 5
A
212 217parallel
Strand 6
A
220 226anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 31first strand
Strand 2
B
5 16anti-parallel
Strand 3
B
62 67anti-parallel
Strand 4
B
70 71anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
165 169parallel
Strand 3
B
196 201parallel
Strand 4
B
36 40parallel
Strand 5
B
212 217parallel
Strand 6
B
220 226anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 31first strand
Strand 2
C
5 16anti-parallel
Strand 3
C
62 67anti-parallel
Strand 4
C
70 71anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 91first strand
Strand 2
C
165 169parallel
Strand 3
C
196 201parallel
Strand 4
C
36 40parallel
Strand 5
C
212 217parallel
Strand 6
C
220 226anti-parallel
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