Analysis of interatomic Contacts of Structural Units in PDB entry:
5LJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LJA entry

There is 1 chain in PDB entry 5LJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2HIS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5LJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 55Right-handed alpha
Helix 2
AA2
A
76 87Right-handed alpha
Helix 3
AA3
A
102 114Right-handed alpha
Helix 4
AA4
A
117 132Right-handed alpha
Helix 5
AA5
A
134 138Right-handed 310
Helix 6
AA6
A
141 145Right-handed 310
Helix 7
AA7
A
146 159Right-handed alpha
Helix 8
AA8
A
176 193Right-handed alpha
Helix 9
AA9
A
203 209Right-handed alpha
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There are 2 sheets in PDB entry 5LJA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 31first strand
Strand 2
A
5 16anti-parallel
Strand 3
A
62 67anti-parallel
Strand 4
A
70 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
165 169parallel
Strand 3
A
196 201parallel
Strand 4
A
36 40parallel
Strand 5
A
212 216parallel
Strand 6
A
221 226anti-parallel
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