Analysis of interatomic Contacts of Structural Units in PDB entry:
5LJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LJO entry

There are 5 chains in PDB entry 5LJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 22	ARG 392
C	CYS 25	ALA 189
D	GLU 26	SER 243
E	GLU 24	LEU 110
A	PHE 24	ILE 806

There are 34 helices in PDB entry 5LJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	22	27	Right-handed alpha
Helix 2	AA2	C	39	44	Right-handed alpha
Helix 3	AA3	C	76	80	Right-handed 310
Helix 4	AA4	C	115	128	Right-handed alpha
Helix 5	AA5	D	31	46	Right-handed alpha
Helix 6	AA6	D	47	62	Right-handed alpha
Helix 7	AA7	D	67	82	Right-handed alpha
Helix 8	AA8	D	84	99	Right-handed alpha
Helix 9	AA9	D	104	121	Right-handed alpha
Helix 10	AB1	D	123	129	Right-handed 310
Helix 11	AB2	D	137	154	Right-handed alpha
Helix 12	AB3	D	159	189	Right-handed alpha
Helix 13	AB4	D	190	205	Right-handed alpha
Helix 14	AB5	D	208	225	Right-handed alpha
Helix 15	AB6	D	227	241	Right-handed alpha
Helix 16	AB7	E	39	45	Right-handed alpha
Helix 17	AB8	E	51	60	Right-handed alpha
Helix 18	AB9	A	38	46	Right-handed alpha
Helix 19	AC1	A	55	68	Right-handed alpha
Helix 20	AC2	A	106	117	Right-handed alpha
Helix 21	AC3	A	126	128	Right-handed 310
Helix 22	AC4	A	129	145	Right-handed alpha
Helix 23	AC5	A	159	161	Right-handed 310
Helix 24	AC6	A	189	195	Right-handed alpha
Helix 25	AC7	A	204	208	Right-handed 310
Helix 26	AC8	A	215	232	Right-handed alpha
Helix 27	AC9	A	280	288	Right-handed alpha
Helix 28	AD1	A	297	315	Right-handed alpha
Helix 29	AD2	A	362	367	Right-handed alpha
Helix 30	AD3	A	378	393	Right-handed alpha
Helix 31	AD4	A	448	452	Right-handed 310
Helix 32	AD5	A	542	552	Right-handed alpha
Helix 33	AD6	A	647	651	Right-handed 310
Helix 34	AD7	A	726	731	Right-handed alpha

There are 20 sheets in PDB entry 5LJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	387	391	anti-parallel
Strand 3	B	379	381	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	A	239	247	parallel
Strand 3	A	253	261	anti-parallel
Strand 4	A	176	183	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	225	231	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	308	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	345	349	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	103	105	anti-parallel
Strand 3	C	171	183	anti-parallel
Strand 4	C	156	167	anti-parallel
Strand 5	C	140	149	anti-parallel
Strand 6	C	131	135	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	171	183	anti-parallel
Strand 3	C	186	188	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	79	first strand
Strand 2	E	87	95	anti-parallel
Strand 3	E	101	106	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	83	86	parallel
Strand 3	A	77	80	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	89	90	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	100	first strand
Strand 2	A	163	174	parallel
Strand 3	A	146	157	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	267	276	anti-parallel
Strand 3	A	334	342	parallel
Strand 4	A	321	329	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	355	first strand
Strand 2	A	412	417	parallel
Strand 3	A	402	404	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	419	420	anti-parallel

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There are 16 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	455	462	anti-parallel
Strand 4	A	466	475	anti-parallel
Strand 5	A	484	494	anti-parallel
Strand 6	A	505	518	anti-parallel
Strand 7	A	523	537	anti-parallel
Strand 8	A	564	581	anti-parallel
Strand 9	A	590	600	anti-parallel
Strand 10	A	608	620	anti-parallel
Strand 11	A	628	640	anti-parallel
Strand 12	A	710	720	anti-parallel
Strand 13	A	734	745	anti-parallel
Strand 14	A	767	778	anti-parallel
Strand 15	A	781	788	anti-parallel
Strand 16	A	802	804	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	663	first strand
Strand 2	A	799	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LJO