Analysis of interatomic Contacts of Structural Units in PDB entry:
5LK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LK6 entry

There are 4 chains in PDB entry 5LK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ASP 303
B
 PRO 2ASP 303
C
 PRO 2ASP 303
D
 PRO 2ASP 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5LK6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
23 37Right-handed alpha
Helix 3
AA3
A
90 102Right-handed alpha
Helix 4
AA4
A
119 134Right-handed alpha
Helix 5
AA5
A
135 139Right-handed 310
Helix 6
AA6
A
151 164Right-handed alpha
Helix 7
AA7
A
186 192Right-handed alpha
Helix 8
AA8
A
199 211Right-handed alpha
Helix 9
AA9
A
213 219Right-handed 310
Helix 10
AB1
A
223 227Right-handed 310
Helix 11
AB2
A
246 260Right-handed alpha
Helix 12
AB3
A
275 280Right-handed 310
Helix 13
AB4
A
284 303Right-handed alpha
Helix 14
AB5
B
4 13Right-handed alpha
Helix 15
AB6
B
23 36Right-handed alpha
Helix 16
AB7
B
86 102Right-handed alpha
Helix 17
AB8
B
119 135Right-handed alpha
Helix 18
AB9
B
136 140Right-handed 310
Helix 19
AC1
B
152 164Right-handed alpha
Helix 20
AC2
B
186 192Right-handed alpha
Helix 21
AC3
B
199 211Right-handed alpha
Helix 22
AC4
B
213 219Right-handed 310
Helix 23
AC5
B
223 227Right-handed 310
Helix 24
AC6
B
246 260Right-handed alpha
Helix 25
AC7
B
284 302Right-handed alpha
Helix 26
AC8
C
4 13Right-handed alpha
Helix 27
AC9
C
18 22Right-handed 310
Helix 28
AD1
C
23 36Right-handed alpha
Helix 29
AD2
C
86 102Right-handed alpha
Helix 30
AD3
C
119 134Right-handed alpha
Helix 31
AD4
C
135 140Right-handed 310
Helix 32
AD5
C
152 164Right-handed alpha
Helix 33
AD6
C
186 192Right-handed alpha
Helix 34
AD7
C
199 211Right-handed alpha
Helix 35
AD8
C
213 219Right-handed 310
Helix 36
AD9
C
223 227Right-handed 310
Helix 37
AE1
C
246 260Right-handed alpha
Helix 38
AE2
C
275 280Right-handed 310
Helix 39
AE3
C
284 302Right-handed alpha
Helix 40
AE4
D
4 12Right-handed alpha
Helix 41
AE5
D
23 37Right-handed alpha
Helix 42
AE6
D
86 102Right-handed alpha
Helix 43
AE7
D
119 135Right-handed alpha
Helix 44
AE8
D
136 140Right-handed 310
Helix 45
AE9
D
152 164Right-handed alpha
Helix 46
AF1
D
186 192Right-handed alpha
Helix 47
AF2
D
199 211Right-handed alpha
Helix 48
AF3
D
213 219Right-handed 310
Helix 49
AF4
D
223 227Right-handed 310
Helix 50
AF5
D
246 260Right-handed alpha
Helix 51
AF6
D
275 280Right-handed 310
Helix 52
AF7
D
283 302Right-handed alpha
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There are 2 sheets in PDB entry 5LK6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
104 108anti-parallel
Strand 4
A
72 77parallel
Strand 5
A
144 150parallel
Strand 6
A
173 176parallel
Strand 7
A
236 243parallel
Strand 8
A
264 273parallel
Strand 9
B
264 273anti-parallel
Strand 10
B
236 243parallel
Strand 11
B
172 178parallel
Strand 12
B
145 151parallel
Strand 13
B
73 77parallel
Strand 14
B
104 109parallel
Strand 15
B
57 63anti-parallel
Strand 16
B
46 52anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 52first strand
Strand 2
C
57 63anti-parallel
Strand 3
C
104 109anti-parallel
Strand 4
C
72 77parallel
Strand 5
C
144 151parallel
Strand 6
C
172 178parallel
Strand 7
C
236 243parallel
Strand 8
C
264 273parallel
Strand 9
D
264 273anti-parallel
Strand 10
D
236 243parallel
Strand 11
D
172 178parallel
Strand 12
D
145 151parallel
Strand 13
D
73 77parallel
Strand 14
D
104 109parallel
Strand 15
D
57 63anti-parallel
Strand 16
D
46 52anti-parallel
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