Analysis of interatomic Contacts of Structural Units in PDB entry:
5LK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LK8 entry

There are 3 chains in PDB entry 5LK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 13TYR 245
B
 PRO 36PRO 260
C
 ASN 2PRO 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5LK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 37Right-handed alpha
Helix 2
AA2
A
81 87Right-handed alpha
Helix 3
AA3
A
89 97Right-handed alpha
Helix 4
AA4
A
137 139Right-handed 310
Helix 5
AA5
A
242 244Right-handed 310
Helix 6
AA6
B
82 87Right-handed alpha
Helix 7
AA7
B
97 104Right-handed 310
Helix 8
AA8
B
105 110Right-handed alpha
Helix 9
AA9
B
141 144Right-handed 310
Helix 10
AB1
B
147 151Right-handed 310
Helix 11
AB2
B
152 157Right-handed alpha
Helix 12
AB3
C
54 60Right-handed alpha
Helix 13
AB4
C
94 98Right-handed 310
Helix 14
AB5
C
113 120Right-handed alpha
Helix 15
AB6
C
155 159Right-handed 310
Helix 16
AB7
C
163 167Right-handed 310
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There are 12 sheets in PDB entry 5LK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 48first strand
Strand 2
A
215 223anti-parallel
Strand 3
A
105 112anti-parallel
Strand 4
A
162 167anti-parallel
Strand 5
C
31 32parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
61 67anti-parallel
Strand 3
A
197 204anti-parallel
Strand 4
A
118 122anti-parallel
Strand 5
A
152 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
176 177anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
C
252 254anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
228 237anti-parallel
Strand 3
B
117 123anti-parallel
Strand 4
B
172 173anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
207 218anti-parallel
Strand 3
B
130 139anti-parallel
Strand 4
B
161 165anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
112 114anti-parallel
Strand 3
B
241 243anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
230 238anti-parallel
Strand 3
C
68 70anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
230 238anti-parallel
Strand 3
C
129 136anti-parallel
Strand 4
C
179 184anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 88first strand
Strand 2
C
211 216anti-parallel
Strand 3
C
145 150anti-parallel
Strand 4
C
168 172anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
109 110anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
124 126anti-parallel
Strand 3
C
243 244anti-parallel
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