Analysis of interatomic Contacts of Structural Units in PDB entry:
5LKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LKB entry

There are 2 chains in PDB entry 5LKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11GLU 372
B
 GLY 11LEU 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5LKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 59Right-handed alpha
Helix 2
AA2
A
95 99Right-handed alpha
Helix 3
AA3
A
140 149Right-handed alpha
Helix 4
AA4
A
173 183Right-handed alpha
Helix 5
AA5
A
184 190Right-handed 310
Helix 6
AA6
A
191 197Right-handed alpha
Helix 7
AA7
A
204 219Right-handed alpha
Helix 8
AA8
A
221 228Right-handed alpha
Helix 9
AA9
A
231 265Right-handed alpha
Helix 10
AB1
A
268 274Right-handed alpha
Helix 11
AB2
A
284 298Right-handed alpha
Helix 12
AB3
A
300 305Right-handed alpha
Helix 13
AB4
A
311 316Right-handed alpha
Helix 14
AB5
A
316 330Right-handed alpha
Helix 15
AB6
A
330 335Right-handed alpha
Helix 16
AB7
A
338 350Right-handed alpha
Helix 17
AB8
B
46 59Right-handed alpha
Helix 18
AB9
B
140 149Right-handed alpha
Helix 19
AC1
B
173 183Right-handed alpha
Helix 20
AC2
B
186 190Right-handed 310
Helix 21
AC3
B
191 197Right-handed alpha
Helix 22
AC4
B
201 203Right-handed 310
Helix 23
AC5
B
204 219Right-handed alpha
Helix 24
AC6
B
221 228Right-handed alpha
Helix 25
AC7
B
231 265Right-handed alpha
Helix 26
AC8
B
268 274Right-handed alpha
Helix 27
AC9
B
284 298Right-handed alpha
Helix 28
AD1
B
300 305Right-handed alpha
Helix 29
AD2
B
311 316Right-handed alpha
Helix 30
AD3
B
316 330Right-handed alpha
Helix 31
AD4
B
330 335Right-handed alpha
Helix 32
AD5
B
338 350Right-handed alpha
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There are 2 sheets in PDB entry 5LKB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
38 42parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
168 171anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
38 42parallel
Strand 3
B
160 163anti-parallel
Strand 4
B
168 171anti-parallel
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