Analysis of interatomic Contacts of Structural Units in PDB entry:
5LKH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LKH entry

There are 5 chains in PDB entry 5LKH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 216	SER 1579
B	PRO 216	SER 1579
C	PRO 216	SER 1579
D	PRO 216	SER 1579
E	PRO 216	SER 1579

There are175 helices in PDB entry 5LKH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	218	224	Right-handed alpha
Helix 2	AA2	A	224	231	Right-handed alpha
Helix 3	AA3	A	232	241	Right-handed alpha
Helix 4	AA4	A	244	253	Right-handed alpha
Helix 5	AA5	A	256	268	Right-handed alpha
Helix 6	AA6	A	272	278	Right-handed alpha
Helix 7	AA7	A	278	287	Right-handed alpha
Helix 8	AA8	A	289	297	Right-handed alpha
Helix 9	AA9	A	398	404	Right-handed alpha
Helix 10	AB1	A	432	451	Right-handed alpha
Helix 11	AB2	A	453	465	Right-handed alpha
Helix 12	AB3	A	471	488	Right-handed alpha
Helix 13	AB4	A	491	499	Right-handed alpha
Helix 14	AB5	A	513	520	Right-handed alpha
Helix 15	AB6	A	545	556	Right-handed alpha
Helix 16	AB7	A	558	570	Right-handed alpha
Helix 17	AB8	A	581	598	Right-handed alpha
Helix 18	AB9	A	601	613	Right-handed alpha
Helix 19	AC1	A	623	645	Right-handed alpha
Helix 20	AC2	A	647	656	Right-handed alpha
Helix 21	AC3	A	664	679	Right-handed alpha
Helix 22	AC4	A	687	700	Right-handed alpha
Helix 23	AC5	A	704	719	Right-handed alpha
Helix 24	AC6	A	726	738	Right-handed alpha
Helix 25	AC7	A	748	770	Right-handed alpha
Helix 26	AC8	A	772	782	Right-handed alpha
Helix 27	AC9	A	797	815	Right-handed alpha
Helix 28	AD1	A	817	827	Right-handed alpha
Helix 29	AD2	A	833	840	Right-handed alpha
Helix 30	AD3	A	842	856	Right-handed alpha
Helix 31	AD4	A	863	868	Right-handed alpha
Helix 32	AD5	A	870	887	Right-handed alpha
Helix 33	AD6	A	1366	1379	Right-handed alpha
Helix 34	AD7	A	1465	1469	Right-handed 310
Helix 35	AD8	A	1512	1517	Right-handed alpha
Helix 36	AD9	B	218	224	Right-handed alpha
Helix 37	AE1	B	224	231	Right-handed alpha
Helix 38	AE2	B	232	241	Right-handed alpha
Helix 39	AE3	B	244	253	Right-handed alpha
Helix 40	AE4	B	256	268	Right-handed alpha
Helix 41	AE5	B	272	278	Right-handed alpha
Helix 42	AE6	B	278	287	Right-handed alpha
Helix 43	AE7	B	289	297	Right-handed alpha
Helix 44	AE8	B	398	404	Right-handed alpha
Helix 45	AE9	B	432	451	Right-handed alpha
Helix 46	AF1	B	453	465	Right-handed alpha
Helix 47	AF2	B	471	488	Right-handed alpha
Helix 48	AF3	B	491	499	Right-handed alpha
Helix 49	AF4	B	513	520	Right-handed alpha
Helix 50	AF5	B	545	556	Right-handed alpha
Helix 51	AF6	B	558	570	Right-handed alpha
Helix 52	AF7	B	581	598	Right-handed alpha
Helix 53	AF8	B	601	613	Right-handed alpha
Helix 54	AF9	B	623	645	Right-handed alpha
Helix 55	AG1	B	647	656	Right-handed alpha
Helix 56	AG2	B	664	679	Right-handed alpha
Helix 57	AG3	B	687	700	Right-handed alpha
Helix 58	AG4	B	704	719	Right-handed alpha
Helix 59	AG5	B	726	738	Right-handed alpha
Helix 60	AG6	B	748	770	Right-handed alpha
Helix 61	AG7	B	772	782	Right-handed alpha
Helix 62	AG8	B	797	815	Right-handed alpha
Helix 63	AG9	B	817	827	Right-handed alpha
Helix 64	AH1	B	833	840	Right-handed alpha
Helix 65	AH2	B	842	856	Right-handed alpha
Helix 66	AH3	B	863	868	Right-handed alpha
Helix 67	AH4	B	870	887	Right-handed alpha
Helix 68	AH5	B	1366	1379	Right-handed alpha
Helix 69	AH6	B	1465	1469	Right-handed 310
Helix 70	AH7	B	1512	1517	Right-handed alpha
Helix 71	AH8	C	218	224	Right-handed alpha
Helix 72	AH9	C	224	231	Right-handed alpha
Helix 73	AI1	C	232	241	Right-handed alpha
Helix 74	AI2	C	244	253	Right-handed alpha
Helix 75	AI3	C	256	268	Right-handed alpha
Helix 76	AI4	C	272	278	Right-handed alpha
Helix 77	AI5	C	278	287	Right-handed alpha
Helix 78	AI6	C	289	297	Right-handed alpha
Helix 79	AI7	C	398	404	Right-handed alpha
Helix 80	AI8	C	432	451	Right-handed alpha
Helix 81	AI9	C	453	465	Right-handed alpha
Helix 82	AJ1	C	471	488	Right-handed alpha
Helix 83	AJ2	C	491	499	Right-handed alpha
Helix 84	AJ3	C	513	520	Right-handed alpha
Helix 85	AJ4	C	545	556	Right-handed alpha
Helix 86	AJ5	C	558	570	Right-handed alpha
Helix 87	AJ6	C	581	598	Right-handed alpha
Helix 88	AJ7	C	601	613	Right-handed alpha
Helix 89	AJ8	C	623	645	Right-handed alpha
Helix 90	AJ9	C	647	656	Right-handed alpha
Helix 91	AK1	C	664	679	Right-handed alpha
Helix 92	AK2	C	687	700	Right-handed alpha
Helix 93	AK3	C	704	719	Right-handed alpha
Helix 94	AK4	C	726	738	Right-handed alpha
Helix 95	AK5	C	748	770	Right-handed alpha
Helix 96	AK6	C	772	782	Right-handed alpha
Helix 97	AK7	C	797	815	Right-handed alpha
Helix 98	AK8	C	817	827	Right-handed alpha
Helix 99	AK9	C	833	840	Right-handed alpha
Helix 100	AL1	C	842	856	Right-handed alpha
Helix 101	AL2	C	863	868	Right-handed alpha
Helix 102	AL3	C	870	887	Right-handed alpha
Helix 103	AL4	C	1366	1379	Right-handed alpha
Helix 104	AL5	C	1465	1469	Right-handed 310
Helix 105	AL6	C	1512	1517	Right-handed alpha
Helix 106	AL7	D	218	224	Right-handed alpha
Helix 107	AL8	D	224	231	Right-handed alpha
Helix 108	AL9	D	232	241	Right-handed alpha
Helix 109	AM1	D	244	253	Right-handed alpha
Helix 110	AM2	D	256	268	Right-handed alpha
Helix 111	AM3	D	272	278	Right-handed alpha
Helix 112	AM4	D	278	287	Right-handed alpha
Helix 113	AM5	D	289	297	Right-handed alpha
Helix 114	AM6	D	398	404	Right-handed alpha
Helix 115	AM7	D	432	451	Right-handed alpha
Helix 116	AM8	D	453	465	Right-handed alpha
Helix 117	AM9	D	471	488	Right-handed alpha
Helix 118	AN1	D	491	499	Right-handed alpha
Helix 119	AN2	D	513	520	Right-handed alpha
Helix 120	AN3	D	545	556	Right-handed alpha
Helix 121	AN4	D	558	570	Right-handed alpha
Helix 122	AN5	D	581	598	Right-handed alpha
Helix 123	AN6	D	601	613	Right-handed alpha
Helix 124	AN7	D	623	645	Right-handed alpha
Helix 125	AN8	D	647	656	Right-handed alpha
Helix 126	AN9	D	664	679	Right-handed alpha
Helix 127	AO1	D	687	700	Right-handed alpha
Helix 128	AO2	D	704	719	Right-handed alpha
Helix 129	AO3	D	726	738	Right-handed alpha
Helix 130	AO4	D	748	770	Right-handed alpha
Helix 131	AO5	D	772	782	Right-handed alpha
Helix 132	AO6	D	797	815	Right-handed alpha
Helix 133	AO7	D	817	827	Right-handed alpha
Helix 134	AO8	D	833	840	Right-handed alpha
Helix 135	AO9	D	842	856	Right-handed alpha
Helix 136	AP1	D	863	868	Right-handed alpha
Helix 137	AP2	D	870	887	Right-handed alpha
Helix 138	AP3	D	1366	1379	Right-handed alpha
Helix 139	AP4	D	1465	1469	Right-handed 310
Helix 140	AP5	D	1512	1517	Right-handed alpha
Helix 141	AP6	E	218	224	Right-handed alpha
Helix 142	AP7	E	224	231	Right-handed alpha
Helix 143	AP8	E	232	241	Right-handed alpha
Helix 144	AP9	E	244	253	Right-handed alpha
Helix 145	AQ1	E	256	268	Right-handed alpha
Helix 146	AQ2	E	272	278	Right-handed alpha
Helix 147	AQ3	E	278	287	Right-handed alpha
Helix 148	AQ4	E	289	297	Right-handed alpha
Helix 149	AQ5	E	398	404	Right-handed alpha
Helix 150	AQ6	E	432	451	Right-handed alpha
Helix 151	AQ7	E	453	465	Right-handed alpha
Helix 152	AQ8	E	471	488	Right-handed alpha
Helix 153	AQ9	E	491	499	Right-handed alpha
Helix 154	AR1	E	513	520	Right-handed alpha
Helix 155	AR2	E	545	556	Right-handed alpha
Helix 156	AR3	E	558	570	Right-handed alpha
Helix 157	AR4	E	581	598	Right-handed alpha
Helix 158	AR5	E	601	613	Right-handed alpha
Helix 159	AR6	E	623	645	Right-handed alpha
Helix 160	AR7	E	647	656	Right-handed alpha
Helix 161	AR8	E	664	679	Right-handed alpha
Helix 162	AR9	E	687	700	Right-handed alpha
Helix 163	AS1	E	704	719	Right-handed alpha
Helix 164	AS2	E	726	738	Right-handed alpha
Helix 165	AS3	E	748	770	Right-handed alpha
Helix 166	AS4	E	772	782	Right-handed alpha
Helix 167	AS5	E	797	815	Right-handed alpha
Helix 168	AS6	E	817	827	Right-handed alpha
Helix 169	AS7	E	833	840	Right-handed alpha
Helix 170	AS8	E	842	856	Right-handed alpha
Helix 171	AS9	E	863	868	Right-handed alpha
Helix 172	AT1	E	870	887	Right-handed alpha
Helix 173	AT2	E	1366	1379	Right-handed alpha
Helix 174	AT3	E	1465	1469	Right-handed 310
Helix 175	AT4	E	1512	1517	Right-handed alpha

There are 35 sheets in PDB entry 5LKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	319	first strand
Strand 2	A	324	334	anti-parallel
Strand 3	A	418	431	anti-parallel
Strand 4	A	406	414	anti-parallel
Strand 5	A	367	371	anti-parallel
Strand 6	A	377	381	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	349	first strand
Strand 2	A	352	358	anti-parallel
Strand 3	A	390	396	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	537	first strand
Strand 2	A	577	578	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1319	1324	first strand
Strand 2	A	1564	1575	anti-parallel
Strand 3	A	1548	1558	anti-parallel
Strand 4	A	1499	1504	anti-parallel
Strand 5	A	1507	1511	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1340	1344	first strand
Strand 2	A	1349	1353	anti-parallel
Strand 3	A	1535	1537	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1357	1359	first strand
Strand 2	A	1528	1530	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1444	1450	first strand
Strand 2	A	1432	1437	anti-parallel
Strand 3	A	1471	1475	anti-parallel
Strand 4	A	1480	1490	anti-parallel
Strand 5	A	1384	1392	anti-parallel
Strand 6	A	1405	1410	anti-parallel
Strand 7	A	1420	1425	anti-parallel
Strand 8	A	1454	1458	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	319	first strand
Strand 2	B	324	334	anti-parallel
Strand 3	B	418	431	anti-parallel
Strand 4	B	406	414	anti-parallel
Strand 5	B	367	371	anti-parallel
Strand 6	B	377	381	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	349	first strand
Strand 2	B	352	358	anti-parallel
Strand 3	B	390	396	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	537	first strand
Strand 2	B	577	578	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1319	1324	first strand
Strand 2	B	1564	1575	anti-parallel
Strand 3	B	1548	1558	anti-parallel
Strand 4	B	1499	1504	anti-parallel
Strand 5	B	1507	1511	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1340	1344	first strand
Strand 2	B	1349	1353	anti-parallel
Strand 3	B	1535	1537	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1357	1359	first strand
Strand 2	B	1528	1530	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1444	1450	first strand
Strand 2	B	1432	1437	anti-parallel
Strand 3	B	1471	1475	anti-parallel
Strand 4	B	1480	1490	anti-parallel
Strand 5	B	1384	1392	anti-parallel
Strand 6	B	1405	1410	anti-parallel
Strand 7	B	1420	1425	anti-parallel
Strand 8	B	1454	1458	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	319	first strand
Strand 2	C	324	334	anti-parallel
Strand 3	C	418	431	anti-parallel
Strand 4	C	406	414	anti-parallel
Strand 5	C	367	371	anti-parallel
Strand 6	C	377	381	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	349	first strand
Strand 2	C	352	358	anti-parallel
Strand 3	C	390	396	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	537	first strand
Strand 2	C	577	578	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1319	1324	first strand
Strand 2	C	1564	1575	anti-parallel
Strand 3	C	1548	1558	anti-parallel
Strand 4	C	1499	1504	anti-parallel
Strand 5	C	1507	1511	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1340	1344	first strand
Strand 2	C	1349	1353	anti-parallel
Strand 3	C	1535	1537	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1357	1359	first strand
Strand 2	C	1528	1530	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1444	1450	first strand
Strand 2	C	1432	1437	anti-parallel
Strand 3	C	1471	1475	anti-parallel
Strand 4	C	1480	1490	anti-parallel
Strand 5	C	1384	1392	anti-parallel
Strand 6	C	1405	1410	anti-parallel
Strand 7	C	1420	1425	anti-parallel
Strand 8	C	1454	1458	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	319	first strand
Strand 2	D	324	334	anti-parallel
Strand 3	D	418	431	anti-parallel
Strand 4	D	406	414	anti-parallel
Strand 5	D	367	371	anti-parallel
Strand 6	D	377	381	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	349	first strand
Strand 2	D	352	358	anti-parallel
Strand 3	D	390	396	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	536	537	first strand
Strand 2	D	577	578	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1319	1324	first strand
Strand 2	D	1564	1575	anti-parallel
Strand 3	D	1548	1558	anti-parallel
Strand 4	D	1499	1504	anti-parallel
Strand 5	D	1507	1511	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1340	1344	first strand
Strand 2	D	1349	1353	anti-parallel
Strand 3	D	1535	1537	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1357	1359	first strand
Strand 2	D	1528	1530	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1444	1450	first strand
Strand 2	D	1432	1437	anti-parallel
Strand 3	D	1471	1475	anti-parallel
Strand 4	D	1480	1490	anti-parallel
Strand 5	D	1384	1392	anti-parallel
Strand 6	D	1405	1410	anti-parallel
Strand 7	D	1420	1425	anti-parallel
Strand 8	D	1454	1458	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	319	first strand
Strand 2	E	324	334	anti-parallel
Strand 3	E	418	431	anti-parallel
Strand 4	E	406	414	anti-parallel
Strand 5	E	367	371	anti-parallel
Strand 6	E	377	381	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	349	first strand
Strand 2	E	352	358	anti-parallel
Strand 3	E	390	396	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	536	537	first strand
Strand 2	E	577	578	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1319	1324	first strand
Strand 2	E	1564	1575	anti-parallel
Strand 3	E	1548	1558	anti-parallel
Strand 4	E	1499	1504	anti-parallel
Strand 5	E	1507	1511	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1340	1344	first strand
Strand 2	E	1349	1353	anti-parallel
Strand 3	E	1535	1537	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1357	1359	first strand
Strand 2	E	1528	1530	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1444	1450	first strand
Strand 2	E	1432	1437	anti-parallel
Strand 3	E	1471	1475	anti-parallel
Strand 4	E	1480	1490	anti-parallel
Strand 5	E	1384	1392	anti-parallel
Strand 6	E	1405	1410	anti-parallel
Strand 7	E	1420	1425	anti-parallel
Strand 8	E	1454	1458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LKH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LKH