Analysis of interatomic Contacts of Structural Units in PDB entry:
5LKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LKM entry

There are 3 chains in PDB entry 5LKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 53PHE 452
B
 THR 54PHE 452
C
 ASN 66PHE 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5LKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
74 81Right-handed alpha
Helix 3
AA3
A
100 113Right-handed alpha
Helix 4
AA4
A
126 138Right-handed alpha
Helix 5
AA5
A
151 163Right-handed alpha
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
A
189 204Right-handed alpha
Helix 8
AA8
A
226 230Right-handed 310
Helix 9
AA9
A
276 284Right-handed alpha
Helix 10
AB1
A
327 341Right-handed alpha
Helix 11
AB2
A
357 359Right-handed 310
Helix 12
AB3
A
363 365Right-handed 310
Helix 13
AB4
A
366 380Right-handed alpha
Helix 14
AB5
A
404 415Right-handed alpha
Helix 15
AB6
A
425 428Right-handed 310
Helix 16
AB7
A
443 452Right-handed alpha
Helix 17
AB8
B
60 62Right-handed 310
Helix 18
AB9
B
74 81Right-handed alpha
Helix 19
AC1
B
100 112Right-handed alpha
Helix 20
AC2
B
126 137Right-handed alpha
Helix 21
AC3
B
152 163Right-handed alpha
Helix 22
AC4
B
186 204Right-handed alpha
Helix 23
AC5
B
276 284Right-handed alpha
Helix 24
AC6
B
327 341Right-handed alpha
Helix 25
AC7
B
357 359Right-handed 310
Helix 26
AC8
B
363 365Right-handed 310
Helix 27
AC9
B
366 380Right-handed alpha
Helix 28
AD1
B
404 415Right-handed alpha
Helix 29
AD2
B
425 428Right-handed 310
Helix 30
AD3
B
443 452Right-handed alpha
Helix 31
AD4
C
74 81Right-handed alpha
Helix 32
AD5
C
100 113Right-handed alpha
Helix 33
AD6
C
126 138Right-handed alpha
Helix 34
AD7
C
152 163Right-handed alpha
Helix 35
AD8
C
189 204Right-handed alpha
Helix 36
AD9
C
226 230Right-handed 310
Helix 37
AE1
C
276 281Right-handed alpha
Helix 38
AE2
C
283 284Right-handed alpha
Helix 39
AE3
C
327 341Right-handed alpha
Helix 40
AE4
C
357 359Right-handed 310
Helix 41
AE5
C
363 365Right-handed 310
Helix 42
AE6
C
366 380Right-handed alpha
Helix 43
AE7
C
404 415Right-handed alpha
Helix 44
AE8
C
425 428Right-handed 310
Helix 45
AE9
C
443 452Right-handed alpha
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There are 12 sheets in PDB entry 5LKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
244 252anti-parallel
Strand 4
A
232 237anti-parallel
Strand 5
A
89 95parallel
Strand 6
A
207 213parallel
Strand 7
A
166 170parallel
Strand 8
A
118 122parallel
Strand 9
A
144 147parallel
Strand 10
B
57 58anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 298first strand
Strand 2
A
301 313anti-parallel
Strand 3
A
349 355anti-parallel
Strand 4
A
321 324parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
419 423parallel
Strand 3
A
437 441parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
399 400anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
166 170parallel
Strand 3
B
207 213parallel
Strand 4
B
89 94parallel
Strand 5
B
234 237parallel
Strand 6
B
245 249anti-parallel
Strand 7
B
260 265anti-parallel
Strand 8
B
270 272anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 298first strand
Strand 2
B
301 313anti-parallel
Strand 3
B
349 355anti-parallel
Strand 4
B
321 324parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 389first strand
Strand 2
B
419 423parallel
Strand 3
B
437 441parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
399 400anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 147first strand
Strand 2
C
118 121parallel
Strand 3
C
166 169parallel
Strand 4
C
207 213parallel
Strand 5
C
89 95parallel
Strand 6
C
232 237parallel
Strand 7
C
244 252anti-parallel
Strand 8
C
260 265anti-parallel
Strand 9
C
270 272anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 298first strand
Strand 2
C
301 313anti-parallel
Strand 3
C
349 355anti-parallel
Strand 4
C
321 324parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
387 389first strand
Strand 2
C
419 423parallel
Strand 3
C
437 441parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
392 393first strand
Strand 2
C
399 400anti-parallel
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