Analysis of interatomic Contacts of Structural Units in PDB entry:
5LKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LKX entry

There is 1 chain in PDB entry 5LKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1046GLN 1661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5LKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1050 1067Right-handed alpha
Helix 2
AA2
A
1072 1076Right-handed 310
Helix 3
AA3
A
1088 1093Right-handed alpha
Helix 4
AA4
A
1098 1108Right-handed alpha
Helix 5
AA5
A
1113 1132Right-handed alpha
Helix 6
AA6
A
1136 1160Right-handed alpha
Helix 7
AA7
A
1202 1208Right-handed alpha
Helix 8
AA8
A
1229 1231Right-handed 310
Helix 9
AA9
A
1256 1260Right-handed alpha
Helix 10
AB1
A
1272 1279Right-handed alpha
Helix 11
AB2
A
1296 1314Right-handed alpha
Helix 12
AB3
A
1336 1344Right-handed alpha
Helix 13
AB4
A
1406 1408Right-handed 310
Helix 14
AB5
A
1409 1429Right-handed alpha
Helix 15
AB6
A
1459 1477Right-handed alpha
Helix 16
AB7
A
1486 1493Right-handed alpha
Helix 17
AB8
A
1497 1501Right-handed 310
Helix 18
AB9
A
1507 1520Right-handed alpha
Helix 19
AC1
A
1583 1591Right-handed alpha
Helix 20
AC2
A
1602 1608Right-handed 310
Helix 21
AC3
A
1621 1625Right-handed 310
Helix 22
AC4
A
1627 1638Right-handed alpha
Helix 23
AC5
A
1643 1661Right-handed alpha
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There are 4 sheets in PDB entry 5LKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1198 1201first strand
Strand 2
A
1190 1194anti-parallel
Strand 3
A
1232 1235anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1212 1215first strand
Strand 2
A
1224 1227anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1244 1246first strand
Strand 2
A
1253 1255anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1321 1334first strand
Strand 2
A
1352 1366anti-parallel
Strand 3
A
1369 1381anti-parallel
Strand 4
A
1392 1400anti-parallel
Strand 5
A
1432 1436parallel
Strand 6
A
1595 1599anti-parallel
Strand 7
A
1482 1485anti-parallel
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