Analysis of interatomic Contacts of Structural Units in PDB entry:
5LL3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LL3 entry

There are 4 chains in PDB entry 5LL3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 25	ILE 441
B	ASN 25	ILE 441
C	ASN 25	ILE 441
D	ASN 25	ILE 441

There are 64 helices in PDB entry 5LL3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	56	Right-handed alpha
Helix 2	AA2	A	63	77	Right-handed alpha
Helix 3	AA3	A	88	101	Right-handed alpha
Helix 4	AA4	A	114	131	Right-handed alpha
Helix 5	AA5	A	146	153	Right-handed alpha
Helix 6	AA6	A	156	160	Right-handed 310
Helix 7	AA7	A	186	203	Right-handed alpha
Helix 8	AA8	A	207	209	Right-handed 310
Helix 9	AA9	A	229	244	Right-handed alpha
Helix 10	AB1	A	263	268	Right-handed 310
Helix 11	AB2	A	279	284	Right-handed 310
Helix 12	AB3	A	295	299	Right-handed alpha
Helix 13	AB4	A	313	330	Right-handed alpha
Helix 14	AB5	A	331	354	Right-handed alpha
Helix 15	AB6	A	381	395	Right-handed alpha
Helix 16	AB7	A	416	436	Right-handed alpha
Helix 17	AB8	B	51	56	Right-handed alpha
Helix 18	AB9	B	63	77	Right-handed alpha
Helix 19	AC1	B	88	101	Right-handed alpha
Helix 20	AC2	B	114	131	Right-handed alpha
Helix 21	AC3	B	146	153	Right-handed alpha
Helix 22	AC4	B	155	159	Right-handed 310
Helix 23	AC5	B	186	203	Right-handed alpha
Helix 24	AC6	B	207	209	Right-handed 310
Helix 25	AC7	B	229	244	Right-handed alpha
Helix 26	AC8	B	263	268	Right-handed 310
Helix 27	AC9	B	279	284	Right-handed 310
Helix 28	AD1	B	295	299	Right-handed alpha
Helix 29	AD2	B	313	330	Right-handed alpha
Helix 30	AD3	B	331	354	Right-handed alpha
Helix 31	AD4	B	381	395	Right-handed alpha
Helix 32	AD5	B	416	436	Right-handed alpha
Helix 33	AD6	C	51	56	Right-handed alpha
Helix 34	AD7	C	63	77	Right-handed alpha
Helix 35	AD8	C	88	101	Right-handed alpha
Helix 36	AD9	C	114	131	Right-handed alpha
Helix 37	AE1	C	146	153	Right-handed alpha
Helix 38	AE2	C	156	160	Right-handed 310
Helix 39	AE3	C	186	203	Right-handed alpha
Helix 40	AE4	C	207	209	Right-handed 310
Helix 41	AE5	C	229	244	Right-handed alpha
Helix 42	AE6	C	263	268	Right-handed 310
Helix 43	AE7	C	279	284	Right-handed 310
Helix 44	AE8	C	295	299	Right-handed alpha
Helix 45	AE9	C	313	330	Right-handed alpha
Helix 46	AF1	C	331	354	Right-handed alpha
Helix 47	AF2	C	381	395	Right-handed alpha
Helix 48	AF3	C	416	437	Right-handed alpha
Helix 49	AF4	D	51	56	Right-handed alpha
Helix 50	AF5	D	63	77	Right-handed alpha
Helix 51	AF6	D	88	101	Right-handed alpha
Helix 52	AF7	D	114	131	Right-handed alpha
Helix 53	AF8	D	146	153	Right-handed alpha
Helix 54	AF9	D	155	159	Right-handed 310
Helix 55	AG1	D	186	203	Right-handed alpha
Helix 56	AG2	D	207	209	Right-handed 310
Helix 57	AG3	D	229	244	Right-handed alpha
Helix 58	AG4	D	263	268	Right-handed 310
Helix 59	AG5	D	279	284	Right-handed 310
Helix 60	AG6	D	295	299	Right-handed alpha
Helix 61	AG7	D	313	330	Right-handed alpha
Helix 62	AG8	D	331	354	Right-handed alpha
Helix 63	AG9	D	381	395	Right-handed alpha
Helix 64	AH1	D	416	436	Right-handed alpha

There are 16 sheets in PDB entry 5LL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	46	49	parallel
Strand 3	A	38	41	anti-parallel
Strand 4	A	30	35	anti-parallel
Strand 5	B	86	87	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	B	30	35	parallel
Strand 3	B	38	41	anti-parallel
Strand 4	B	46	49	anti-parallel
Strand 5	B	397	398	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	112	first strand
Strand 2	A	289	294	anti-parallel
Strand 3	A	275	278	anti-parallel
Strand 4	A	246	250	parallel
Strand 5	A	211	216	parallel
Strand 6	A	134	138	parallel
Strand 7	A	170	173	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	226	227	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	362	first strand
Strand 2	A	367	371	anti-parallel
Strand 3	A	406	409	anti-parallel
Strand 4	A	400	402	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	112	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	275	278	anti-parallel
Strand 4	B	246	250	parallel
Strand 5	B	211	216	parallel
Strand 6	B	134	138	parallel
Strand 7	B	170	173	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	226	227	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	362	first strand
Strand 2	B	367	371	anti-parallel
Strand 3	B	406	409	anti-parallel
Strand 4	B	400	402	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	46	49	parallel
Strand 3	C	38	41	anti-parallel
Strand 4	C	30	35	anti-parallel
Strand 5	D	86	87	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	D	30	35	parallel
Strand 3	D	38	41	anti-parallel
Strand 4	D	46	49	anti-parallel
Strand 5	D	397	398	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	112	first strand
Strand 2	C	289	294	anti-parallel
Strand 3	C	275	278	anti-parallel
Strand 4	C	246	250	parallel
Strand 5	C	211	216	parallel
Strand 6	C	134	138	parallel
Strand 7	C	170	173	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	226	227	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	362	first strand
Strand 2	C	367	371	anti-parallel
Strand 3	C	406	409	anti-parallel
Strand 4	C	400	402	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	112	first strand
Strand 2	D	289	294	anti-parallel
Strand 3	D	275	278	anti-parallel
Strand 4	D	246	250	parallel
Strand 5	D	211	216	parallel
Strand 6	D	134	138	parallel
Strand 7	D	170	173	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	226	227	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	362	first strand
Strand 2	D	367	371	anti-parallel
Strand 3	D	406	409	anti-parallel
Strand 4	D	400	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LL3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LL3