Analysis of interatomic Contacts of Structural Units in PDB entry:
5LL6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LL6 entry

There are 20 chains in PDB entry 5LL6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	U 1	U 1798
P	SER 2	PRO 207
Q	VAL 20	GLY 233
R	ASN 29	PHE 254
S	ALA 2	LEU 261
T	MET 1	ILE 226
U	PRO 4	SER 187
V	GLY 2	LYS 200
W	PRO 2	GLU 186
X	SER 2	PHE 156
Y	GLY 2	ASN 151
Z	SER 11	LEU 137
a	MET 1	ARG 87
b	THR 2	TYR 130
c	GLY 2	SER 145
d	SER 2	ASN 133
e	PRO 2	PRO 98
f	VAL 2	LYS 82
g	ALA 2	SER 61
h	LYS 4	ASP 604

There are110 helices in PDB entry 5LL6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	10	21	Right-handed alpha
Helix 2	AA2	P	49	67	Right-handed alpha
Helix 3	AA3	P	79	93	Right-handed alpha
Helix 4	AA4	P	129	137	Right-handed alpha
Helix 5	AA5	P	169	184	Right-handed alpha
Helix 6	AA6	P	198	202	Right-handed 310
Helix 7	AA7	Q	57	62	Right-handed alpha
Helix 8	AA8	Q	70	75	Right-handed alpha
Helix 9	AA9	Q	106	114	Right-handed alpha
Helix 10	AB1	Q	158	176	Right-handed alpha
Helix 11	AB2	Q	179	189	Right-handed alpha
Helix 12	AB3	Q	192	202	Right-handed alpha
Helix 13	AB4	Q	224	231	Right-handed alpha
Helix 14	AB5	R	38	48	Right-handed alpha
Helix 15	AB6	R	53	60	Right-handed alpha
Helix 16	AB7	R	66	73	Right-handed alpha
Helix 17	AB8	R	120	135	Right-handed alpha
Helix 18	AB9	R	181	192	Right-handed alpha
Helix 19	AC1	R	206	220	Right-handed alpha
Helix 20	AC2	R	226	230	Right-handed 310
Helix 21	AC3	R	238	243	Right-handed alpha
Helix 22	AC4	S	15	19	Right-handed 310
Helix 23	AC5	S	44	50	Right-handed alpha
Helix 24	AC6	S	57	66	Right-handed alpha
Helix 25	AC7	S	93	96	Right-handed 310
Helix 26	AC8	S	117	121	Right-handed 310
Helix 27	AC9	S	133	135	Right-handed 310
Helix 28	AD1	S	247	255	Right-handed alpha
Helix 29	AD2	T	20	25	Right-handed 310
Helix 30	AD3	T	59	61	Right-handed 310
Helix 31	AD4	T	137	146	Right-handed alpha
Helix 32	AD5	T	180	223	Right-handed alpha
Helix 33	AD6	U	5	10	Right-handed alpha
Helix 34	AD7	U	14	29	Right-handed alpha
Helix 35	AD8	U	66	74	Right-handed alpha
Helix 36	AD9	U	74	84	Right-handed alpha
Helix 37	AE1	U	113	116	Right-handed 310
Helix 38	AE2	U	117	129	Right-handed alpha
Helix 39	AE3	U	168	177	Right-handed alpha
Helix 40	AE4	V	89	94	Right-handed alpha
Helix 41	AE5	V	106	117	Right-handed alpha
Helix 42	AE6	V	136	146	Right-handed alpha
Helix 43	AE7	V	153	163	Right-handed alpha
Helix 44	AE8	V	172	177	Right-handed alpha
Helix 45	AE9	V	185	197	Right-handed alpha
Helix 46	AF1	W	20	35	Right-handed alpha
Helix 47	AF2	W	38	61	Right-handed alpha
Helix 48	AF3	W	66	83	Right-handed alpha
Helix 49	AF4	W	94	99	Right-handed alpha
Helix 50	AF5	W	100	108	Right-handed alpha
Helix 51	AF6	W	108	117	Right-handed alpha
Helix 52	AF7	W	121	131	Right-handed alpha
Helix 53	AF8	W	152	156	Right-handed 310
Helix 54	AF9	W	171	178	Right-handed alpha
Helix 55	AG1	W	181	185	Right-handed 310
Helix 56	AG2	X	45	50	Right-handed alpha
Helix 57	AG3	Y	30	44	Right-handed alpha
Helix 58	AG4	Y	46	57	Right-handed alpha
Helix 59	AG5	Y	62	67	Right-handed alpha
Helix 60	AG6	Y	70	79	Right-handed alpha
Helix 61	AG7	Y	85	105	Right-handed alpha
Helix 62	AG8	Y	109	132	Right-handed alpha
Helix 63	AG9	Y	145	151	Right-handed alpha
Helix 64	AH1	Z	43	47	Right-handed 310
Helix 65	AH2	Z	51	55	Right-handed 310
Helix 66	AH3	Z	56	75	Right-handed alpha
Helix 67	AH4	Z	96	107	Right-handed alpha
Helix 68	AH5	a	56	63	Right-handed alpha
Helix 69	AH6	a	64	77	Right-handed alpha
Helix 70	AH7	b	5	21	Right-handed alpha
Helix 71	AH8	b	31	45	Right-handed alpha
Helix 72	AH9	b	84	94	Right-handed alpha
Helix 73	AI1	b	112	120	Right-handed alpha
Helix 74	AI2	c	11	23	Right-handed alpha
Helix 75	AI3	c	26	34	Right-handed alpha
Helix 76	AI4	c	35	40	Right-handed alpha
Helix 77	AI5	c	131	137	Right-handed alpha
Helix 78	AI6	d	36	49	Right-handed alpha
Helix 79	AI7	d	78	86	Right-handed alpha
Helix 80	AI8	d	87	95	Right-handed alpha
Helix 81	AI9	d	104	118	Right-handed alpha
Helix 82	AJ1	d	122	133	Right-handed alpha
Helix 83	AJ2	e	49	56	Right-handed alpha
Helix 84	AJ3	e	75	81	Right-handed alpha
Helix 85	AJ4	f	11	18	Right-handed alpha
Helix 86	AJ5	g	12	18	Right-handed alpha
Helix 87	AJ6	g	32	44	Right-handed alpha
Helix 88	AJ7	h	17	22	Right-handed alpha
Helix 89	AJ8	h	23	28	Right-handed alpha
Helix 90	AJ9	h	31	35	Right-handed 310
Helix 91	AK1	h	59	64	Right-handed alpha
Helix 92	AK2	h	115	125	Right-handed alpha
Helix 93	AK3	h	139	147	Right-handed alpha
Helix 94	AK4	h	151	161	Right-handed alpha
Helix 95	AK5	h	174	180	Right-handed alpha
Helix 96	AK6	h	187	195	Right-handed alpha
Helix 97	AK7	h	199	209	Right-handed alpha
Helix 98	AK8	h	223	238	Right-handed alpha
Helix 99	AK9	h	253	267	Right-handed alpha
Helix 100	AL1	h	283	288	Right-handed alpha
Helix 101	AL2	h	310	320	Right-handed alpha
Helix 102	AL3	h	390	400	Right-handed alpha
Helix 103	AL4	h	429	435	Right-handed alpha
Helix 104	AL5	h	446	451	Right-handed alpha
Helix 105	AL6	h	457	462	Right-handed alpha
Helix 106	AL7	h	469	480	Right-handed alpha
Helix 107	AL8	h	499	517	Right-handed alpha
Helix 108	AL9	h	527	533	Right-handed alpha
Helix 109	AM1	h	556	569	Right-handed alpha
Helix 110	AM2	h	588	598	Right-handed alpha

There are 41 sheets in PDB entry 5LL6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	37	41	first strand
Strand 2	P	45	48	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	98	99	first strand
Strand 2	P	74	77	parallel
Strand 3	P	121	123	parallel
Strand 4	P	143	145	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	42	47	first strand
Strand 2	Q	29	33	anti-parallel
Strand 3	Q	96	98	parallel
Strand 4	Q	83	90	anti-parallel
Strand 5	Q	65	69	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	42	47	first strand
Strand 2	Q	29	33	anti-parallel
Strand 3	Q	96	98	parallel
Strand 4	Q	83	90	anti-parallel
Strand 5	Q	102	104	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	120	121	first strand
Strand 2	Q	141	142	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	124	128	first strand
Strand 2	Q	134	138	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	81	89	first strand
Strand 2	R	94	106	anti-parallel
Strand 3	R	110	118	anti-parallel
Strand 4	R	136	138	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	141	142	first strand
Strand 2	R	153	154	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	158	162	first strand
Strand 2	R	165	171	anti-parallel
Strand 3	R	196	200	anti-parallel
Strand 4	R	178	179	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	42	43	first strand
Strand 2	S	83	84	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	71	72	first strand
Strand 2	S	89	91	anti-parallel
Strand 3	S	98	100	anti-parallel
Strand 4	S	112	113	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	122	125	first strand
Strand 2	S	159	162	anti-parallel
Strand 3	S	169	173	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	131	first strand
Strand 2	S	137	140	anti-parallel
Strand 3	S	147	148	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	191	192	first strand
Strand 2	S	179	183	anti-parallel
Strand 3	S	225	230	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	207	211	first strand
Strand 2	S	217	221	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	12	17	first strand
Strand 2	T	2	7	anti-parallel
Strand 3	T	106	111	parallel
Strand 4	T	49	57	anti-parallel
Strand 5	T	35	37	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	73	77	first strand
Strand 2	T	93	97	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	46	50	first strand
Strand 2	U	56	60	anti-parallel
Strand 3	U	92	93	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	180	184	first strand
Strand 2	U	148	154	parallel
Strand 3	U	135	142	anti-parallel
Strand 4	b	51	53	anti-parallel
Strand 5	b	61	64	anti-parallel
Strand 6	b	24	27	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	3	4	first strand
Strand 2	V	29	30	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	42	48	first strand
Strand 2	V	51	58	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	62	66	first strand
Strand 2	V	73	83	anti-parallel
Strand 3	V	100	104	anti-parallel
Strand 4	V	165	169	anti-parallel
Strand 5	V	181	183	anti-parallel
Strand 6	V	62	66	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	67	76	first strand
Strand 2	X	83	94	anti-parallel
Strand 3	X	99	110	anti-parallel
Strand 4	X	137	143	parallel
Strand 5	X	122	127	anti-parallel
Strand 6	X	67	76	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	19	20	first strand
Strand 2	Z	27	28	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	81	83	first strand
Strand 2	Z	115	117	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	15	16	first strand
Strand 2	a	23	24	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	32	37	first strand
Strand 2	a	50	55	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	71	73	first strand
Strand 2	b	124	130	anti-parallel
Strand 3	b	101	105	anti-parallel
Strand 4	b	110	111	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	82	86	first strand
Strand 2	c	71	76	anti-parallel
Strand 3	c	50	56	anti-parallel
Strand 4	c	102	103	anti-parallel
Strand 5	c	126	127	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	5	15	first strand
Strand 2	d	20	28	anti-parallel
Strand 3	d	68	76	anti-parallel
Strand 4	d	60	62	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	20	22	first strand
Strand 2	e	29	31	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	38	43	first strand
Strand 2	e	66	71	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	32	35	first strand
Strand 2	f	44	47	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	64	65	first strand
Strand 2	f	72	73	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	6	10	first strand
Strand 2	h	71	75	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	39	40	first strand
Strand 2	h	49	50	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	93	94	first strand
Strand 2	h	301	304	parallel
Strand 3	h	290	297	anti-parallel
Strand 4	h	105	109	parallel
Strand 5	h	273	277	parallel
Strand 6	h	242	246	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	93	94	first strand
Strand 2	h	301	304	parallel
Strand 3	h	290	297	anti-parallel
Strand 4	h	308	309	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	355	356	first strand
Strand 2	h	373	374	anti-parallel

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There are 8 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	360	362	first strand
Strand 2	h	367	369	anti-parallel
Strand 3	h	548	555	parallel
Strand 4	h	538	542	anti-parallel
Strand 5	h	380	384	parallel
Strand 6	h	520	524	parallel
Strand 7	h	488	492	parallel
Strand 8	h	416	417	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	572	574	first strand
Strand 2	h	581	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LL6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LL6