Analysis of interatomic Contacts of Structural Units in PDB entry:
5LLW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LLW entry

There are 2 chains in PDB entry 5LLW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 8	GLN 683
A	ASP 8	TYR 575

There are 42 helices in PDB entry 5LLW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	17	Right-handed alpha
Helix 2	AA2	B	18	20	Right-handed 310
Helix 3	AA3	B	50	56	Right-handed alpha
Helix 4	AA4	B	64	71	Right-handed 310
Helix 5	AA5	B	72	77	Right-handed alpha
Helix 6	AA6	B	78	88	Right-handed alpha
Helix 7	AA7	B	126	142	Right-handed alpha
Helix 8	AA8	B	144	161	Right-handed alpha
Helix 9	AA9	B	196	200	Right-handed 310
Helix 10	AB1	B	201	206	Right-handed alpha
Helix 11	AB2	B	249	259	Right-handed alpha
Helix 12	AB3	B	290	335	Right-handed alpha
Helix 13	AB4	B	339	356	Right-handed alpha
Helix 14	AB5	B	376	390	Right-handed alpha
Helix 15	AB6	B	401	406	Right-handed alpha
Helix 16	AB7	B	485	528	Right-handed alpha
Helix 17	AB8	B	536	555	Right-handed alpha
Helix 18	AB9	B	567	575	Right-handed alpha
Helix 19	AC1	B	576	595	Right-handed alpha
Helix 20	AC2	B	617	635	Right-handed alpha
Helix 21	AC3	B	657	675	Right-handed alpha
Helix 22	AC4	A	9	17	Right-handed alpha
Helix 23	AC5	A	18	20	Right-handed 310
Helix 24	AC6	A	50	59	Right-handed alpha
Helix 25	AC7	A	65	71	Right-handed 310
Helix 26	AC8	A	72	77	Right-handed alpha
Helix 27	AC9	A	78	88	Right-handed alpha
Helix 28	AD1	A	126	141	Right-handed alpha
Helix 29	AD2	A	144	161	Right-handed alpha
Helix 30	AD3	A	196	200	Right-handed 310
Helix 31	AD4	A	201	208	Right-handed alpha
Helix 32	AD5	A	249	259	Right-handed alpha
Helix 33	AD6	A	290	335	Right-handed alpha
Helix 34	AD7	A	339	356	Right-handed alpha
Helix 35	AD8	A	376	391	Right-handed alpha
Helix 36	AD9	A	401	406	Right-handed alpha
Helix 37	AE1	A	485	528	Right-handed alpha
Helix 38	AE2	A	536	555	Right-handed alpha
Helix 39	AE3	A	567	575	Right-handed alpha
Helix 40	AE4	A	576	595	Right-handed alpha
Helix 41	AE5	A	617	635	Right-handed alpha
Helix 42	AE6	A	657	675	Right-handed alpha

There are 11 sheets in PDB entry 5LLW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	44	48	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	112	119	anti-parallel
Strand 6	B	102	109	anti-parallel
Strand 7	B	95	98	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	216	first strand
Strand 2	B	263	271	anti-parallel
Strand 3	B	274	283	anti-parallel
Strand 4	B	164	170	anti-parallel
Strand 5	B	176	183	anti-parallel
Strand 6	B	193	195	anti-parallel
Strand 7	B	444	448	parallel
Strand 8	B	472	476	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	359	364	anti-parallel
Strand 3	B	432	439	anti-parallel
Strand 4	B	416	423	anti-parallel
Strand 5	B	397	399	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	458	first strand
Strand 2	B	461	464	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	600	605	first strand
Strand 2	B	608	614	anti-parallel
Strand 3	B	558	565	anti-parallel
Strand 4	B	645	651	anti-parallel
Strand 5	B	680	682	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	44	48	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	112	119	anti-parallel
Strand 6	A	102	109	anti-parallel
Strand 7	A	95	98	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	176	183	anti-parallel
Strand 3	A	164	170	anti-parallel
Strand 4	A	274	283	anti-parallel
Strand 5	A	263	271	anti-parallel
Strand 6	A	213	216	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	372	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	432	439	anti-parallel
Strand 4	A	416	423	anti-parallel
Strand 5	A	397	399	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	448	first strand
Strand 2	A	472	476	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	461	464	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	600	603	first strand
Strand 2	A	608	614	anti-parallel
Strand 3	A	558	565	anti-parallel
Strand 4	A	645	651	anti-parallel
Strand 5	A	680	682	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LLW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LLW