Analysis of interatomic Contacts of Structural Units in PDB entry:
5LLY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LLY entry

There are 3 chains in PDB entry 5LLY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 16	ASP 517
A	ASP 9	LEU 522
C	ILE 10	PRO 232

There are 60 helices in PDB entry 5LLY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	50	56	Right-handed alpha
Helix 2	AA2	D	64	70	Right-handed alpha
Helix 3	AA3	D	72	77	Right-handed alpha
Helix 4	AA4	D	78	88	Right-handed alpha
Helix 5	AA5	D	126	141	Right-handed alpha
Helix 6	AA6	D	144	161	Right-handed alpha
Helix 7	AA7	D	196	200	Right-handed 310
Helix 8	AA8	D	201	211	Right-handed alpha
Helix 9	AA9	D	249	259	Right-handed alpha
Helix 10	AB1	D	290	336	Right-handed alpha
Helix 11	AB2	D	339	356	Right-handed alpha
Helix 12	AB3	D	376	391	Right-handed alpha
Helix 13	AB4	D	401	406	Right-handed alpha
Helix 14	AB5	D	485	517	Right-handed alpha
Helix 15	AB6	A	10	17	Right-handed alpha
Helix 16	AB7	A	51	59	Right-handed alpha
Helix 17	AB8	A	65	70	Right-handed alpha
Helix 18	AB9	A	72	77	Right-handed alpha
Helix 19	AC1	A	78	88	Right-handed alpha
Helix 20	AC2	A	126	142	Right-handed alpha
Helix 21	AC3	A	144	161	Right-handed alpha
Helix 22	AC4	A	196	200	Right-handed 310
Helix 23	AC5	A	201	208	Right-handed alpha
Helix 24	AC6	A	249	260	Right-handed alpha
Helix 25	AC7	A	290	336	Right-handed alpha
Helix 26	AC8	A	339	355	Right-handed alpha
Helix 27	AC9	A	376	391	Right-handed alpha
Helix 28	AD1	A	401	406	Right-handed alpha
Helix 29	AD2	A	485	522	Right-handed alpha
Helix 30	AD3	C	11	16	Right-handed alpha
Helix 31	AD4	C	17	20	Right-handed 310
Helix 32	AD5	C	50	56	Right-handed alpha
Helix 33	AD6	C	65	71	Right-handed alpha
Helix 34	AD7	C	72	76	Right-handed 310
Helix 35	AD8	C	78	87	Right-handed alpha
Helix 36	AD9	C	126	141	Right-handed alpha
Helix 37	AE1	C	144	161	Right-handed alpha
Helix 38	AE2	C	196	200	Right-handed 310
Helix 39	AE3	C	201	211	Right-handed alpha
Helix 40	AE4	C	249	259	Right-handed alpha
Helix 41	AE5	C	290	336	Right-handed alpha
Helix 42	AE6	C	339	356	Right-handed alpha
Helix 43	AE7	C	376	391	Right-handed alpha
Helix 44	AE8	C	401	406	Right-handed alpha
Helix 45	AE9	C	485	522	Right-handed alpha
Helix 46	AF1	B	10	17	Right-handed alpha
Helix 47	AF2	B	18	20	Right-handed 310
Helix 48	AF3	B	51	56	Right-handed alpha
Helix 49	AF4	B	64	71	Right-handed alpha
Helix 50	AF5	B	72	77	Right-handed alpha
Helix 51	AF6	B	78	88	Right-handed alpha
Helix 52	AF7	B	126	141	Right-handed alpha
Helix 53	AF8	B	144	161	Right-handed alpha
Helix 54	AF9	B	196	200	Right-handed 310
Helix 55	AG1	B	201	208	Right-handed alpha
Helix 56	AG2	B	249	259	Right-handed alpha
Helix 57	AG3	B	290	336	Right-handed alpha
Helix 58	AG4	B	339	355	Right-handed alpha
Helix 59	AG5	B	376	390	Right-handed alpha
Helix 60	AG6	B	485	515	Right-handed alpha

There are 17 sheets in PDB entry 5LLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	224	228	anti-parallel
Strand 3	D	44	48	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	112	119	anti-parallel
Strand 6	D	102	109	anti-parallel
Strand 7	D	95	98	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	216	first strand
Strand 2	D	263	271	anti-parallel
Strand 3	D	274	283	anti-parallel
Strand 4	D	164	170	anti-parallel
Strand 5	D	176	183	anti-parallel
Strand 6	D	193	195	anti-parallel
Strand 7	D	443	448	parallel
Strand 8	D	472	477	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	372	first strand
Strand 2	D	359	364	anti-parallel
Strand 3	D	432	439	anti-parallel
Strand 4	D	416	423	anti-parallel
Strand 5	D	397	399	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	457	first strand
Strand 2	D	462	463	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	44	48	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	112	119	anti-parallel
Strand 6	A	102	109	anti-parallel
Strand 7	A	95	98	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	263	271	anti-parallel
Strand 3	A	274	283	anti-parallel
Strand 4	A	164	170	anti-parallel
Strand 5	A	176	183	anti-parallel
Strand 6	A	193	195	anti-parallel
Strand 7	A	441	448	parallel
Strand 8	A	472	480	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	372	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	432	439	anti-parallel
Strand 4	A	416	423	anti-parallel
Strand 5	A	397	399	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	461	464	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	224	228	anti-parallel
Strand 3	C	44	48	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	112	119	anti-parallel
Strand 6	C	102	109	anti-parallel
Strand 7	C	95	98	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	263	271	anti-parallel
Strand 3	C	274	283	anti-parallel
Strand 4	C	164	170	anti-parallel
Strand 5	C	176	183	anti-parallel
Strand 6	C	193	195	anti-parallel
Strand 7	C	443	448	parallel
Strand 8	C	472	477	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	372	first strand
Strand 2	C	359	364	anti-parallel
Strand 3	C	432	439	anti-parallel
Strand 4	C	416	423	anti-parallel
Strand 5	C	397	399	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	458	first strand
Strand 2	C	461	464	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	44	48	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	112	119	anti-parallel
Strand 6	B	102	109	anti-parallel
Strand 7	B	95	98	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	176	183	anti-parallel
Strand 3	B	164	170	anti-parallel
Strand 4	B	274	283	anti-parallel
Strand 5	B	263	271	anti-parallel
Strand 6	B	213	216	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	359	364	anti-parallel
Strand 3	B	432	437	anti-parallel
Strand 4	B	420	423	anti-parallel
Strand 5	B	397	398	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	448	first strand
Strand 2	B	472	480	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	458	first strand
Strand 2	B	461	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LLY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LLY