Analysis of interatomic Contacts of Structural Units in PDB entry:
5LM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LM3 entry

There is 1 chain in PDB entry 5LM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3GLU 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5LM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
51 65Right-handed alpha
Helix 3
AA3
A
70 72Right-handed 310
Helix 4
AA4
A
87 99Right-handed alpha
Helix 5
AA5
A
114 119Right-handed 310
Helix 6
AA6
A
121 128Right-handed alpha
Helix 7
AA7
A
142 147Right-handed alpha
Helix 8
AA8
A
161 166Right-handed 310
Helix 9
AA9
A
167 174Right-handed alpha
Helix 10
AB1
A
180 185Right-handed alpha
Helix 11
AB2
A
189 200Right-handed alpha
Helix 12
AB3
A
201 204Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 5LM3.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
35 40parallel
Strand 3
A
4 11parallel
Strand 4
A
102 109parallel
Strand 5
A
130 134parallel
Strand 6
A
151 155parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il