Analysis of interatomic Contacts of Structural Units in PDB entry:
5LM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LM7 entry

There are 10 chains in PDB entry 5LM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	GLY 426
B	ALA 4	ASN 137
J	GLN 2	SER 101
N	LEU -2	TRP 82
R	C 3	C 31
C	GLY -1	GLN 421
D	ALA 5	PRO 136
E	GLN 2	SER 101
F	LEU -2	THR 81
G	C 5	C 31

There are 62 helices in PDB entry 5LM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	12	Right-handed alpha
Helix 2	AA2	A	19	39	Right-handed alpha
Helix 3	AA3	A	78	84	Right-handed 310
Helix 4	AA4	A	104	134	Right-handed alpha
Helix 5	AA5	A	201	211	Right-handed alpha
Helix 6	AA6	A	213	218	Right-handed alpha
Helix 7	AA7	A	246	253	Right-handed alpha
Helix 8	AA8	A	256	266	Right-handed alpha
Helix 9	AA9	A	279	289	Right-handed alpha
Helix 10	AB1	A	310	319	Right-handed alpha
Helix 11	AB2	A	322	333	Right-handed alpha
Helix 12	AB3	A	341	363	Right-handed alpha
Helix 13	AB4	A	365	377	Right-handed alpha
Helix 14	AB5	A	380	387	Right-handed alpha
Helix 15	AB6	A	400	422	Right-handed alpha
Helix 16	AB7	B	6	24	Right-handed alpha
Helix 17	AB8	B	26	38	Right-handed alpha
Helix 18	AB9	B	44	53	Right-handed alpha
Helix 19	AC1	B	54	56	Right-handed 310
Helix 20	AC2	B	57	64	Right-handed alpha
Helix 21	AC3	B	65	67	Right-handed 310
Helix 22	AC4	B	78	94	Right-handed alpha
Helix 23	AC5	B	99	115	Right-handed alpha
Helix 24	AC6	B	118	124	Right-handed alpha
Helix 25	AC7	B	126	131	Right-handed alpha
Helix 26	AC8	B	132	134	Right-handed 310
Helix 27	AC9	J	14	33	Right-handed alpha
Helix 28	AD1	J	80	88	Right-handed alpha
Helix 29	AD2	N	2	11	Right-handed alpha
Helix 30	AD3	N	11	20	Right-handed alpha
Helix 31	AD4	N	46	53	Right-handed alpha
Helix 32	AD5	N	57	79	Right-handed alpha
Helix 33	AD6	C	1	13	Right-handed alpha
Helix 34	AD7	C	19	39	Right-handed alpha
Helix 35	AD8	C	77	84	Right-handed alpha
Helix 36	AD9	C	103	133	Right-handed alpha
Helix 37	AE1	C	201	213	Right-handed alpha
Helix 38	AE2	C	213	218	Right-handed alpha
Helix 39	AE3	C	246	253	Right-handed alpha
Helix 40	AE4	C	256	267	Right-handed alpha
Helix 41	AE5	C	279	288	Right-handed alpha
Helix 42	AE6	C	310	319	Right-handed alpha
Helix 43	AE7	C	322	333	Right-handed alpha
Helix 44	AE8	C	341	364	Right-handed alpha
Helix 45	AE9	C	366	377	Right-handed alpha
Helix 46	AF1	C	389	393	Right-handed 310
Helix 47	AF2	C	401	421	Right-handed alpha
Helix 48	AF3	D	7	24	Right-handed alpha
Helix 49	AF4	D	26	38	Right-handed alpha
Helix 50	AF5	D	44	58	Right-handed alpha
Helix 51	AF6	D	58	67	Right-handed alpha
Helix 52	AF7	D	68	70	Right-handed 310
Helix 53	AF8	D	78	95	Right-handed alpha
Helix 54	AF9	D	99	115	Right-handed alpha
Helix 55	AG1	D	119	134	Right-handed alpha
Helix 56	AG2	E	14	32	Right-handed alpha
Helix 57	AG3	E	80	90	Right-handed alpha
Helix 58	AG4	F	4	11	Right-handed alpha
Helix 59	AG5	F	11	20	Right-handed alpha
Helix 60	AG6	F	34	39	Right-handed alpha
Helix 61	AG7	F	48	53	Right-handed alpha
Helix 62	AG8	F	57	73	Right-handed alpha

There are 11 sheets in PDB entry 5LM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	56	63	anti-parallel
Strand 3	A	92	93	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	146	first strand
Strand 2	A	149	153	anti-parallel
Strand 3	A	159	163	anti-parallel
Strand 4	A	196	198	parallel
Strand 5	A	178	185	anti-parallel
Strand 6	A	137	146	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	228	first strand
Strand 2	A	233	239	anti-parallel
Strand 3	A	270	275	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	306	309	anti-parallel
Strand 3	A	338	340	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	12	first strand
Strand 2	J	66	76	anti-parallel
Strand 3	J	45	48	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	57	61	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	65	first strand
Strand 2	C	74	76	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	149	153	anti-parallel
Strand 3	C	137	145	anti-parallel
Strand 4	C	178	187	anti-parallel
Strand 5	C	194	198	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	229	first strand
Strand 2	C	233	240	anti-parallel
Strand 3	C	270	275	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	304	309	anti-parallel
Strand 3	C	335	340	parallel
Strand 4	F	26	27	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	47	first strand
Strand 2	E	67	74	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LM7