Analysis of interatomic Contacts of Structural Units in PDB entry:
5LM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LM9 entry

There is 1 chain in PDB entry 5LM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 102ALA 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5LM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 133Right-handed alpha
Helix 2
AA2
A
165 167Right-handed 310
Helix 3
AA3
A
201 213Right-handed alpha
Helix 4
AA4
A
213 218Right-handed alpha
Helix 5
AA5
A
246 253Right-handed alpha
Helix 6
AA6
A
256 266Right-handed alpha
Helix 7
AA7
A
279 288Right-handed alpha
Helix 8
AA8
A
313 319Right-handed alpha
Helix 9
AA9
A
322 333Right-handed alpha
Helix 10
AB1
A
341 364Right-handed alpha
Helix 11
AB2
A
366 376Right-handed alpha
Helix 12
AB3
A
380 387Right-handed alpha
Helix 13
AB4
A
390 395Right-handed 310
Helix 14
AB5
A
399 420Right-handed alpha
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There are 3 sheets in PDB entry 5LM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 145first strand
Strand 2
A
149 153anti-parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
195 198parallel
Strand 5
A
178 186anti-parallel
Strand 6
A
137 145anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 229first strand
Strand 2
A
233 240anti-parallel
Strand 3
A
270 275parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 299first strand
Strand 2
A
304 309anti-parallel
Strand 3
A
335 340parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il