Analysis of interatomic Contacts of Structural Units in PDB entry:
5LMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LMB entry

There are 4 chains in PDB entry 5LMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 364ASN 524
A
 TYR 526VAL 634
B
 TYR 364ASN 524
B
 TYR 526TYR 630
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5LMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
366 368Right-handed 310
Helix 2
AA2
A
412 427Right-handed alpha
Helix 3
AA3
A
456 463Right-handed alpha
Helix 4
AA4
A
467 488Right-handed alpha
Helix 5
AA5
A
496 498Right-handed 310
Helix 6
AA6
A
535 539Right-handed 310
Helix 7
AA7
A
540 547Right-handed alpha
Helix 8
AA8
A
551 567Right-handed alpha
Helix 9
AA9
A
577 587Right-handed alpha
Helix 10
AB1
A
598 609Right-handed alpha
Helix 11
AB2
A
618 634Right-handed alpha
Helix 12
AB3
B
366 368Right-handed 310
Helix 13
AB4
B
411 427Right-handed alpha
Helix 14
AB5
B
456 462Right-handed alpha
Helix 15
AB6
B
467 488Right-handed alpha
Helix 16
AB7
B
496 498Right-handed 310
Helix 17
AB8
B
535 539Right-handed 310
Helix 18
AB9
B
540 547Right-handed alpha
Helix 19
AC1
B
551 567Right-handed alpha
Helix 20
AC2
B
577 587Right-handed alpha
Helix 21
AC3
B
598 609Right-handed alpha
Helix 22
AC4
B
618 630Right-handed alpha
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There are 9 sheets in PDB entry 5LMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 379first strand
Strand 2
A
384 392anti-parallel
Strand 3
A
395 403anti-parallel
Strand 4
A
444 449anti-parallel
Strand 5
A
435 440anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 379first strand
Strand 2
A
384 392anti-parallel
Strand 3
A
395 403anti-parallel
Strand 4
B
589 591anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 455first strand
Strand 2
A
500 504anti-parallel
Strand 3
A
507 510anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 491first strand
Strand 2
A
517 518anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
548 550anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 380first strand
Strand 2
B
383 391anti-parallel
Strand 3
B
396 404anti-parallel
Strand 4
B
444 449anti-parallel
Strand 5
B
435 440anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 455first strand
Strand 2
B
500 504anti-parallel
Strand 3
B
507 510anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 491first strand
Strand 2
B
517 518anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
525 527first strand
Strand 2
B
548 550anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il