Analysis of interatomic Contacts of Structural Units in PDB entry:
5LMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LMC entry

There is 1 chain in PDB entry 5LMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2CYS 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5LMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 54Right-handed 310
Helix 2
AA2
A
55 67Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
87 95Right-handed alpha
Helix 5
AA5
A
103 115Right-handed alpha
Helix 6
AA6
A
178 182Right-handed 310
Helix 7
AA7
A
183 199Right-handed alpha
Helix 8
AA8
A
202 215Right-handed alpha
Helix 9
AA9
A
235 247Right-handed alpha
Helix 10
AB1
A
263 280Right-handed alpha
Helix 11
AB2
A
294 305Right-handed alpha
Helix 12
AB3
A
320 334Right-handed alpha
Helix 13
AB4
A
351 363Right-handed alpha
Helix 14
AB5
A
378 397Right-handed alpha
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There are 7 sheets in PDB entry 5LMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
9 11anti-parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
45 48anti-parallel
Strand 5
A
74 76parallel
Strand 6
A
100 102parallel
Strand 7
A
121 123parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
33 35anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
27 28anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
152 156anti-parallel
Strand 4
A
161 165anti-parallel
Strand 5
A
222 225parallel
Strand 6
A
230 231anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 289first strand
Strand 2
A
253 258parallel
Strand 3
A
307 311parallel
Strand 4
A
339 346parallel
Strand 5
A
366 367parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 289first strand
Strand 2
A
253 258parallel
Strand 3
A
307 311parallel
Strand 4
A
339 346parallel
Strand 5
A
371 374parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
318 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il