Analysis of interatomic Contacts of Structural Units in PDB entry:
5LMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LMF entry

There are 4 chains in PDB entry 5LMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 472LYS 796
B
 GLY 473LYS 796
C
 THR 484THR 500
D
 THR 484THR 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5LMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
474 498Right-handed alpha
Helix 2
AA2
A
504 511Right-handed alpha
Helix 3
AA3
A
521 527Right-handed alpha
Helix 4
AA4
A
529 535Right-handed alpha
Helix 5
AA5
A
535 541Right-handed alpha
Helix 6
AA6
A
544 558Right-handed alpha
Helix 7
AA7
A
559 561Right-handed 310
Helix 8
AA8
A
562 569Right-handed alpha
Helix 9
AA9
A
577 601Right-handed alpha
Helix 10
AB1
A
604 618Right-handed alpha
Helix 11
AB2
A
620 625Right-handed alpha
Helix 12
AB3
A
627 645Right-handed alpha
Helix 13
AB4
A
661 674Right-handed alpha
Helix 14
AB5
A
676 681Right-handed 310
Helix 15
AB6
A
683 695Right-handed alpha
Helix 16
AB7
A
701 714Right-handed alpha
Helix 17
AB8
A
716 750Right-handed alpha
Helix 18
AB9
A
755 783Right-handed alpha
Helix 19
AC1
B
474 498Right-handed alpha
Helix 20
AC2
B
504 511Right-handed alpha
Helix 21
AC3
B
521 527Right-handed alpha
Helix 22
AC4
B
529 535Right-handed alpha
Helix 23
AC5
B
535 541Right-handed alpha
Helix 24
AC6
B
544 558Right-handed alpha
Helix 25
AC7
B
562 569Right-handed alpha
Helix 26
AC8
B
577 599Right-handed alpha
Helix 27
AC9
B
605 619Right-handed alpha
Helix 28
AD1
B
620 625Right-handed alpha
Helix 29
AD2
B
627 649Right-handed alpha
Helix 30
AD3
B
657 674Right-handed alpha
Helix 31
AD4
B
676 681Right-handed 310
Helix 32
AD5
B
683 695Right-handed alpha
Helix 33
AD6
B
701 715Right-handed alpha
Helix 34
AD7
B
716 727Right-handed alpha
Helix 35
AD8
B
727 750Right-handed alpha
Helix 36
AD9
B
755 781Right-handed alpha
Helix 37
AE1
C
485 497Right-handed alpha
Helix 38
AE2
D
485 497Right-handed alpha
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There are 2 sheets in PDB entry 5LMF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
785 787first strand
Strand 2
A
792 794anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
785 788first strand
Strand 2
B
791 794anti-parallel
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