Analysis of interatomic Contacts of Structural Units in PDB entry:
5LMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LMV entry

There are 30 chains in PDB entry 5LMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 5	U 1542
B	VAL 7	GLN 240
C	GLY 2	VAL 207
D	GLY 2	ARG 209
E	ASP 5	GLY 154
F	MET 1	ALA 101
G	ALA 2	TRP 156
H	MET 1	TRP 138
I	GLU 2	ARG 128
J	LYS 3	THR 100
K	LYS 11	SER 129
L	PRO 5	ALA 128
M	ALA 2	GLY 119
N	ALA 2	TRP 61
O	PRO 2	GLY 89
P	MET 1	GLU 83
Q	PRO 2	LYS 100
R	PRO 16	LYS 88
S	PRO 2	HIS 83
T	ARG 8	ALA 106
V	GLY 2	LYS 25
W	ALA 1	LYS 71
X	LYS 3	VAL 170
Y	A 20	U 39
Z	C 1	G 7
Z	G 9	G 31
Z	U 33	G 45
Z	U 47	G 53
Z	C 56	A 76
a	LEU 56	MET 566

There are 92 helices in PDB entry 5LMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	25	30	Right-handed 310
Helix 2	AA2	B	43	65	Right-handed alpha
Helix 3	AA3	B	74	88	Right-handed alpha
Helix 4	AA4	B	107	122	Right-handed alpha
Helix 5	AA5	B	131	149	Right-handed alpha
Helix 6	AA6	B	150	152	Right-handed 310
Helix 7	AA7	B	170	180	Right-handed alpha
Helix 8	AA8	B	208	226	Right-handed alpha
Helix 9	AA9	C	25	47	Right-handed alpha
Helix 10	AB1	C	72	78	Right-handed alpha
Helix 11	AB2	C	82	95	Right-handed alpha
Helix 12	AB3	C	112	127	Right-handed alpha
Helix 13	AB4	C	129	145	Right-handed alpha
Helix 14	AB5	D	8	16	Right-handed alpha
Helix 15	AB6	D	52	69	Right-handed alpha
Helix 16	AB7	D	71	85	Right-handed alpha
Helix 17	AB8	D	88	99	Right-handed alpha
Helix 18	AB9	D	100	108	Right-handed alpha
Helix 19	AC1	D	113	123	Right-handed alpha
Helix 20	AC2	D	150	153	Right-handed 310
Helix 21	AC3	D	155	166	Right-handed alpha
Helix 22	AC4	D	199	209	Right-handed alpha
Helix 23	AC5	E	50	65	Right-handed alpha
Helix 24	AC6	E	103	114	Right-handed alpha
Helix 25	AC7	E	127	142	Right-handed alpha
Helix 26	AC8	E	144	152	Right-handed alpha
Helix 27	AC9	F	15	33	Right-handed alpha
Helix 28	AD1	F	68	70	Right-handed 310
Helix 29	AD2	F	71	82	Right-handed alpha
Helix 30	AD3	G	20	31	Right-handed alpha
Helix 31	AD4	G	35	54	Right-handed alpha
Helix 32	AD5	G	57	70	Right-handed alpha
Helix 33	AD6	G	92	111	Right-handed alpha
Helix 34	AD7	G	115	130	Right-handed alpha
Helix 35	AD8	G	133	148	Right-handed alpha
Helix 36	AD9	G	149	154	Right-handed 310
Helix 37	AE1	H	4	20	Right-handed alpha
Helix 38	AE2	H	29	43	Right-handed alpha
Helix 39	AE3	H	102	107	Right-handed 310
Helix 40	AE4	H	121	128	Right-handed alpha
Helix 41	AE5	I	33	37	Right-handed alpha
Helix 42	AE6	I	42	47	Right-handed alpha
Helix 43	AE7	I	47	54	Right-handed alpha
Helix 44	AE8	I	69	89	Right-handed alpha
Helix 45	AE9	I	91	96	Right-handed 310
Helix 46	AF1	J	12	31	Right-handed alpha
Helix 47	AF2	J	80	88	Right-handed alpha
Helix 48	AF3	K	57	74	Right-handed alpha
Helix 49	AF4	K	90	102	Right-handed alpha
Helix 50	AF5	L	6	14	Right-handed alpha
Helix 51	AF6	L	116	121	Right-handed alpha
Helix 52	AF7	M	14	21	Right-handed alpha
Helix 53	AF8	M	26	38	Right-handed alpha
Helix 54	AF9	M	49	64	Right-handed alpha
Helix 55	AG1	M	67	84	Right-handed alpha
Helix 56	AG2	M	86	95	Right-handed alpha
Helix 57	AG3	M	107	112	Right-handed alpha
Helix 58	AG4	N	40	51	Right-handed alpha
Helix 59	AG5	O	4	16	Right-handed alpha
Helix 60	AG6	O	24	46	Right-handed alpha
Helix 61	AG7	O	50	74	Right-handed alpha
Helix 62	AG8	O	74	86	Right-handed alpha
Helix 63	AG9	P	52	63	Right-handed alpha
Helix 64	AH1	P	67	78	Right-handed alpha
Helix 65	AH2	Q	82	98	Right-handed alpha
Helix 66	AH3	R	21	26	Right-handed alpha
Helix 67	AH4	R	36	41	Right-handed alpha
Helix 68	AH5	R	52	57	Right-handed alpha
Helix 69	AH6	R	59	77	Right-handed alpha
Helix 70	AH7	S	15	20	Right-handed alpha
Helix 71	AH8	S	63	67	Right-handed 310
Helix 72	AH9	S	70	74	Right-handed 310
Helix 73	AI1	T	12	47	Right-handed alpha
Helix 74	AI2	T	49	69	Right-handed alpha
Helix 75	AI3	T	75	94	Right-handed alpha
Helix 76	AI4	V	8	16	Right-handed alpha
Helix 77	AI5	W	37	44	Right-handed alpha
Helix 78	AI6	X	31	42	Right-handed alpha
Helix 79	AI7	X	61	78	Right-handed alpha
Helix 80	AI8	X	95	113	Right-handed alpha
Helix 81	AI9	X	128	144	Right-handed alpha
Helix 82	AJ1	a	61	66	Right-handed alpha
Helix 83	AJ2	a	85	99	Right-handed alpha
Helix 84	AJ3	a	158	172	Right-handed alpha
Helix 85	AJ4	a	188	200	Right-handed alpha
Helix 86	AJ5	a	222	238	Right-handed alpha
Helix 87	AJ6	a	328	353	Right-handed alpha
Helix 88	AJ7	a	360	367	Right-handed alpha
Helix 89	AJ8	a	381	395	Right-handed alpha
Helix 90	AJ9	a	413	424	Right-handed alpha
Helix 91	AK1	a	435	446	Right-handed alpha
Helix 92	AK2	a	454	465	Right-handed alpha

There are 34 sheets in PDB entry 5LMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	41	42	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	68	71	parallel
Strand 3	B	161	164	parallel
Strand 4	B	184	186	parallel
Strand 5	B	199	200	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	59	first strand
Strand 2	C	64	70	anti-parallel
Strand 3	C	100	105	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	171	first strand
Strand 2	C	148	155	anti-parallel
Strand 3	C	195	203	anti-parallel
Strand 4	C	182	190	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	126	128	anti-parallel
Strand 3	D	144	148	anti-parallel
Strand 4	D	182	185	anti-parallel
Strand 5	D	174	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	14	first strand
Strand 2	E	29	35	anti-parallel
Strand 3	E	40	47	anti-parallel
Strand 4	E	66	68	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	19	first strand
Strand 2	E	24	26	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	84	first strand
Strand 2	E	87	93	anti-parallel
Strand 3	E	118	124	anti-parallel
Strand 4	E	100	101	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	52	first strand
Strand 2	F	55	67	anti-parallel
Strand 3	F	2	10	anti-parallel
Strand 4	F	85	92	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	R	29	30	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	80	first strand
Strand 2	G	83	90	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	56	62	anti-parallel
Strand 3	H	47	53	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	85	first strand
Strand 2	H	131	138	anti-parallel
Strand 3	H	94	95	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	85	first strand
Strand 2	H	131	138	anti-parallel
Strand 3	H	109	114	anti-parallel
Strand 4	H	117	120	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	17	21	anti-parallel
Strand 3	I	59	63	anti-parallel
Strand 4	I	26	28	parallel
Strand 5	I	31	32	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	10	first strand
Strand 2	I	13	14	anti-parallel
Strand 3	I	66	67	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	48	first strand
Strand 2	J	62	74	anti-parallel
Strand 3	J	4	10	anti-parallel
Strand 4	J	95	98	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	48	first strand
Strand 2	J	62	74	anti-parallel
Strand 3	N	56	58	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	43	first strand
Strand 2	K	28	33	anti-parallel
Strand 3	K	16	23	anti-parallel
Strand 4	K	79	85	parallel
Strand 5	K	105	110	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	82	85	first strand
Strand 2	L	33	43	anti-parallel
Strand 3	L	53	60	anti-parallel
Strand 4	L	65	69	anti-parallel
Strand 5	L	96	99	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	8	first strand
Strand 2	P	17	23	anti-parallel
Strand 3	P	34	39	anti-parallel
Strand 4	P	49	51	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	15	first strand
Strand 2	Q	18	28	anti-parallel
Strand 3	Q	35	45	anti-parallel
Strand 4	Q	69	79	parallel
Strand 5	Q	55	66	anti-parallel
Strand 6	Q	5	15	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	31	33	first strand
Strand 2	S	48	52	parallel
Strand 3	S	57	61	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	7	17	first strand
Strand 2	W	21	26	anti-parallel
Strand 3	W	33	36	anti-parallel
Strand 4	W	64	67	parallel
Strand 5	W	52	57	anti-parallel
Strand 6	W	7	17	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	6	7	first strand
Strand 2	X	45	49	anti-parallel
Strand 3	X	56	59	anti-parallel
Strand 4	X	15	19	parallel
Strand 5	X	25	30	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	85	90	first strand
Strand 2	X	115	121	parallel
Strand 3	X	160	167	anti-parallel
Strand 4	X	148	150	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	85	90	first strand
Strand 2	X	115	121	parallel
Strand 3	X	160	167	anti-parallel
Strand 4	X	155	156	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	76	77	first strand
Strand 2	a	146	151	parallel
Strand 3	a	176	179	parallel
Strand 4	a	211	214	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	113	116	first strand
Strand 2	a	121	124	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	284	287	first strand
Strand 2	a	278	281	anti-parallel
Strand 3	a	322	325	anti-parallel
Strand 4	a	248	256	anti-parallel
Strand 5	a	262	270	anti-parallel
Strand 6	a	307	311	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	273	274	first strand
Strand 2	a	301	302	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	291	292	first strand
Strand 2	a	298	299	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	401	409	first strand
Strand 2	a	372	379	parallel
Strand 3	a	425	430	parallel
Strand 4	a	448	452	parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	480	486	first strand
Strand 2	a	497	501	anti-parallel
Strand 3	a	544	549	anti-parallel
Strand 4	a	520	529	anti-parallel
Strand 5	a	511	515	anti-parallel
Strand 6	a	560	564	anti-parallel
Strand 7	a	480	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LMV