Analysis of interatomic Contacts of Structural Units in PDB entry:
5LMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LMZ entry

There are 2 chains in PDB entry 5LMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8ALA 298
B
 ARG 8ALA 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5LMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
127 135Right-handed alpha
Helix 5
AA5
A
156 161Right-handed alpha
Helix 6
AA6
A
162 171Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
183 187Right-handed 310
Helix 9
AA9
A
222 226Right-handed alpha
Helix 10
AB1
A
227 229Right-handed 310
Helix 11
AB2
A
253 258Right-handed 310
Helix 12
AB3
A
283 287Right-handed 310
Helix 13
AB4
B
22 35Right-handed alpha
Helix 14
AB5
B
51 58Right-handed alpha
Helix 15
AB6
B
62 66Right-handed 310
Helix 16
AB7
B
127 135Right-handed alpha
Helix 17
AB8
B
156 161Right-handed alpha
Helix 18
AB9
B
162 171Right-handed alpha
Helix 19
AC1
B
174 178Right-handed 310
Helix 20
AC2
B
183 187Right-handed 310
Helix 21
AC3
B
222 227Right-handed alpha
Helix 22
AC4
B
253 258Right-handed 310
Helix 23
AC5
B
283 287Right-handed 310
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There are 4 sheets in PDB entry 5LMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
10 15parallel
Strand 3
A
71 75parallel
Strand 4
A
118 122parallel
Strand 5
A
86 91anti-parallel
Strand 6
A
136 141anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 210first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
272 277anti-parallel
Strand 4
A
263 267anti-parallel
Strand 5
A
244 251parallel
Strand 6
A
235 240anti-parallel
Strand 7
A
293 297anti-parallel
Strand 8
A
202 210anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
10 15parallel
Strand 3
B
71 75parallel
Strand 4
B
117 122parallel
Strand 5
B
86 91anti-parallel
Strand 6
B
136 141anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 249first strand
Strand 2
B
235 240anti-parallel
Strand 3
B
293 297anti-parallel
Strand 4
B
202 210anti-parallel
Strand 5
B
215 221anti-parallel
Strand 6
B
272 277anti-parallel
Strand 7
B
263 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il